COPASI API  4.16.103
CMathModel Member List

This is the complete list of members for CMathModel, including all inherited members.

add(CCopasiObject *pObject, const bool &adopt=true)CCopasiContainervirtual
addDirectDependency(const CCopasiObject *pObject)CCopasiObject
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
applyInitialValues()CMathModel
Array enum valueCCopasiObjectprotected
buildDependendRefreshList(const std::set< const CCopasiObject * > &changedObjects) const CMathModel
buildRequiredRefreshList(const std::set< const CCopasiObject * > &requiredObjects) const CMathModel
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())CCopasiObjectstatic
calculateRootDerivatives(CVector< C_FLOAT64 > &rootDerivatives)CMathModel
calculateRootJacobian(CMatrix< C_FLOAT64 > &jacobian, const CVector< C_FLOAT64 > &rates)CMathModelprivate
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)CCopasiContainer
CCopasiObject()CCopasiObjectprotected
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)CCopasiObjectprotected
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)CCopasiObject
clearDirectDependencies()CCopasiObject
clearRefresh()CCopasiObject
CMathModel(const CCopasiContainer *pParent=NULL)CMathModel
CMathModel(const CMathModel &src, const CCopasiContainer *pParent=NULL)CMathModel
CObjectInterface()CObjectInterfaceinline
compile(CModel *pModel)CMathModel
Container enum valueCCopasiObjectprotected
DataModel enum valueCCopasiObjectprotected
DataObjectSet typedefCCopasiObject
DataUpdateSequence typedefCCopasiObject
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const CCopasiObject
determineInitialRoots(CVector< C_INT > &foundRoots)CMathModelprivate
EmptyListCCopasiContainerstatic
evaluateRoots(CVectorCore< C_FLOAT64 > &rootValues, const bool &ignoreDiscrete)CMathModel
Flag enum nameCCopasiObjectprotected
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const CCopasiObject
getChildObjectUnits(const CCopasiObject *pObject) const CCopasiContainervirtual
getCN() const CCopasiObjectvirtual
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const CCopasiObjectvirtual
getInitialTime() const CMathModel
getKey() const CCopasiObjectvirtual
getNumRoots() const CMathModel
getObject(const CCopasiObjectName &cn) const CCopasiContainervirtual
getObjectAncestor(const std::string &type) const CCopasiObject
getObjectDataModel()CCopasiObject
getObjectDataModel() const CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const CCopasiObjectvirtual
getObjectName() const CCopasiObject
getObjectParent() const CCopasiObject
getObjects() const CCopasiContainervirtual
getObjectType() const CCopasiObject
getPrerequisites() const CCopasiObjectvirtual
getProcessQueue() const CMathModel
getProcessQueue()CMathModel
getProcessQueueExecutionTime() const CMathModel
getRefresh() const CCopasiObjectvirtual
getRootFinders() const CMathModel
getUnits() const CCopasiContainervirtual
getUpdateMethod() const CCopasiObject
getValueObject() const CCopasiContainervirtual
getValuePointer() const CCopasiObjectvirtual
Gui enum valueCCopasiObjectprotected
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const CCopasiObject
hasUpdateMethod() const CCopasiObject
initObjects()CCopasiContainerprotected
isArray() const CCopasiObject
isContainer() const CCopasiObject
isDataModel() const CCopasiObject
isMatrix() const CCopasiObject
isNameVector() const CCopasiObject
isNonUniqueName() const CCopasiObject
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const CCopasiObjectvirtual
isReference() const CCopasiObject
isRoot() const CCopasiObject
isSeparator() const CCopasiObject
isStaticString() const CCopasiObject
isValueBool() const CCopasiObject
isValueDbl() const CCopasiObject
isValueInt() const CCopasiObject
isValueInt64() const CCopasiObject
isValueString() const CCopasiObject
isVector() const CCopasiObject
Matrix enum valueCCopasiObjectprotected
mEventsCMathModelprivate
mObjectsCCopasiContainerprotected
ModelEntity enum valueCCopasiObjectprotected
mpModelCMathModelprivate
mProcessQueueCMathModelprivate
mRootDiscreteCMathModelprivate
mRootIndex2EventCMathModelprivate
mRootIndex2RootFinderCMathModelprivate
mRootRefreshesCMathModelprivate
mRootValuesCMathModelprivate
mustBeDeleted(const DataObjectSet &deletedObjects) const CCopasiObjectvirtual
NameVector enum valueCCopasiObjectprotected
NonUniqueName enum valueCCopasiObjectprotected
objectMap typedefCCopasiContainer
ObjectSet typedefCObjectInterface
print(std::ostream *ostream) const CCopasiObjectvirtual
processQueue(const C_FLOAT64 &time, const bool &equality, CProcessQueue::resolveSimultaneousAssignments pResolveSimultaneousAssignments)CMathModel
processRoots(const C_FLOAT64 &time, const bool &equality, const bool &correct, const CVector< C_INT > &roots)CMathModel
processRoots(const C_FLOAT64 &time, const CVector< C_INT > &roots)CMathModel
Reference enum valueCCopasiObjectprotected
remove(CCopasiObject *pObject)CCopasiContainervirtual
removeDirectDependency(const CCopasiObject *pObject)CCopasiObject
Root enum valueCCopasiObjectprotected
Separator enum valueCCopasiObjectprotected
setDirectDependencies(const DataObjectSet &directDependencies)CCopasiObject
setObjectName(const std::string &name)CCopasiObject
setObjectParent(const CCopasiContainer *pParent)CCopasiObjectvirtual
setObjectValue(const C_FLOAT64 &value)CCopasiObject
setObjectValue(const C_INT32 &value)CCopasiObject
setObjectValue(const bool &value)CCopasiObject
setRefresh(CType *pType, void(CType::*method)(void))CCopasiObjectinline
setRenameHandler(CRenameHandler *rh)CCopasiObjectinlinestatic
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))CCopasiObjectinline
smpRenameHandlerCCopasiObjectprotectedstatic
StaticString enum valueCCopasiObjectprotected
UpdateSequence typedefCObjectInterface
ValueBool enum valueCCopasiObjectprotected
ValueDbl enum valueCCopasiObjectprotected
ValueInt enum valueCCopasiObjectprotected
ValueInt64 enum valueCCopasiObjectprotected
ValueString enum valueCCopasiObjectprotected
Vector enum valueCCopasiObjectprotected
~CCopasiContainer()CCopasiContainervirtual
~CCopasiObject()CCopasiObjectvirtual
~CMathModel()CMathModelvirtual
~CObjectInterface()CObjectInterfaceinlinevirtual