COPASI API
4.16.103
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#include <CCopasiXMLParser.h>
Public Member Functions | |
SCopasiXMLParserCommon () | |
Definition at line 87 of file CCopasiXMLParser.h.
SCopasiXMLParserCommon::SCopasiXMLParserCommon | ( | ) |
Default Constructor
Definition at line 14586 of file CCopasiXMLParser.cpp.
std::string SCopasiXMLParserCommon::CharacterData |
Storage for a comment.
Definition at line 110 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ModelParameterElement::end(), CCopasiXMLParser::ModelParameterSetElement::end(), CCopasiXMLParser::CharacterDataElement::end(), CCopasiXMLParser::ReactionElement::end(), CCopasiXMLParser::MetaboliteElement::end(), CCopasiXMLParser::CompartmentElement::end(), CCopasiXMLParser::ModelValueElement::end(), CCopasiXMLParser::EventElement::end(), CCopasiXMLParser::AssignmentElement::end(), CCopasiXMLParser::CommentElement::end(), CCopasiXMLParser::ModelElement::end(), CCopasiXMLParser::ParameterTextElement::end(), CCopasiXMLParser::HeaderElement::end(), CCopasiXMLParser::BodyElement::end(), CCopasiXMLParser::FooterElement::end(), CCopasiXMLParser::TableElement::end(), CCopasiXMLParser::ReportElement::end(), CCopasiXMLParser::FunctionElement::end(), CCopasiXMLParser::MiriamAnnotationElement::end(), and CCopasiXMLParser::ObjectElement::start().
std::string SCopasiXMLParserCommon::FunctionDescription |
The description of the function.
Definition at line 136 of file CCopasiXMLParser.h.
CKeyFactory SCopasiXMLParserCommon::KeyMap |
A map relating CopasiXML function keys with internal keys
Definition at line 184 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ListOfModelParameterSetsElement::end(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CCopasiXMLParser::ListOfReportsElement::end(), CCopasiXMLParser::COPASIElement::end(), CCopasiXMLParser::ModelParameterSetElement::start(), CCopasiXMLParser::StateTemplateVariableElement::start(), CCopasiXMLParser::SourceParameterElement::start(), CCopasiXMLParser::CallParameterElement::start(), CCopasiXMLParser::KineticLawElement::start(), CCopasiXMLParser::ModifierElement::start(), CCopasiXMLParser::ProductElement::start(), CCopasiXMLParser::SubstrateElement::start(), CCopasiXMLParser::ReactionElement::start(), CCopasiXMLParser::MetaboliteElement::start(), CCopasiXMLParser::AssignmentElement::start(), CCopasiXMLParser::ParameterElement::start(), CCopasiXMLParser::SliderElement::start(), CCopasiXMLParser::CompartmentGlyphElement::start(), CCopasiXMLParser::MetaboliteGlyphElement::start(), CCopasiXMLParser::MetaboliteReferenceGlyphElement::start(), CCopasiXMLParser::ReactionGlyphElement::start(), CCopasiXMLParser::TextGlyphElement::start(), CCopasiXMLParser::SBMLMapElement::start(), and CCopasiXMLParser::LocalStyleElement::start().
std::vector<std::pair<std::string, std::string> > SCopasiXMLParserCommon::mAssignments |
Storage for assignments.
Definition at line 115 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::EventElement::start().
std::map< size_t, std::string > SCopasiXMLParserCommon::mFunctionParameterKeyMap |
A map of new function to old keys parameter definitions
Definition at line 146 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::FunctionElement::end(), CCopasiXMLParser::ParameterDescriptionElement::start(), CCopasiXMLParser::ListOfParameterDescriptionsElement::start(), and CCopasiXMLParser::FunctionElement::start().
std::map< std::string, CExpression * > SCopasiXMLParserCommon::mKey2ObjectiveFunction |
A map of a key to the infix of the objective function. This is only needed for old files containing the objective function as part of the list of function definitions
Definition at line 158 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::TaskElement::end(), and CCopasiXMLParser::FunctionElement::start().
std::stack< CModelParameterGroup * > SCopasiXMLParserCommon::ModelParameterGroupStack |
Stack of Model Parameter Groups which is needed since nesting of groups is possible.
Definition at line 234 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ModelParameterGroupElement::end(), CCopasiXMLParser::ModelParameterSetElement::end(), CCopasiXMLParser::ModelParameterElement::start(), CCopasiXMLParser::ModelParameterGroupElement::start(), and CCopasiXMLParser::ModelParameterSetElement::start().
int SCopasiXMLParserCommon::mParameterGroupLevel |
Nesting level of the currently processed parameter group
Definition at line 293 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser().
CExpression* SCopasiXMLParserCommon::mpExpression |
Pointer to the currently processed expression. This is only needed for old files containing the objective function as part of the list of function definitions
Definition at line 152 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::FunctionElement::end(), and CCopasiXMLParser::FunctionElement::start().
bool SCopasiXMLParserCommon::mPredefinedFunction |
Indicates whether the current function was already in the list;
Definition at line 141 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::FunctionElement::end(), CCopasiXMLParser::ParameterDescriptionElement::start(), and CCopasiXMLParser::FunctionElement::start().
std::stack< CCopasiParameterGroup * > SCopasiXMLParserCommon::ParameterGroupStack |
Stack of parameter groups which is needed since nesting of groups is possible.
Definition at line 228 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ParameterGroupElement::end(), CCopasiXMLParser::ParameterGroupElement::setDerivedElement(), and CCopasiXMLParser::ParameterGroupElement::start().
CLCompartmentGlyph* SCopasiXMLParserCommon::pCompartmentGlyph |
Definition at line 273 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), and CCopasiXMLParser::CompartmentGlyphElement::start().
CPlotDataChannelSpec* SCopasiXMLParserCommon::pCurrentChannelSpec |
Pointer to the currently processed channel.
Definition at line 254 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ListOfChannelsElement::end(), and CCopasiXMLParser::ChannelSpecElement::start().
CLayout* SCopasiXMLParserCommon::pCurrentLayout |
Pointer to the currently processed layout
Definition at line 271 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::ListOfLayoutsElement::end(), CCopasiXMLParser::CompartmentGlyphElement::start(), CCopasiXMLParser::MetaboliteGlyphElement::start(), CCopasiXMLParser::ReactionGlyphElement::start(), CCopasiXMLParser::TextGlyphElement::start(), CCopasiXMLParser::AdditionalGOElement::start(), CCopasiXMLParser::LayoutElement::start(), and CCopasiXMLParser::LocalRenderInformationElement::start().
CModelParameter* SCopasiXMLParserCommon::pCurrentModelParameter |
The currently handeled Model Parameter
Definition at line 239 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ModelParameterElement::end(), CCopasiXMLParser::ModelParameterGroupElement::end(), CCopasiXMLParser::ModelParameterSetElement::end(), and CCopasiXMLParser::ModelParameterElement::start().
CCopasiParameter* SCopasiXMLParserCommon::pCurrentParameter |
Pointer to the currently processed parameter
Definition at line 222 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CCopasiXMLParser::ParameterTextElement::end(), CCopasiXMLParser::ParameterGroupElement::end(), CCopasiXMLParser::getCurrentGroup(), CCopasiXMLParser::ParameterElement::start(), and CCopasiXMLParser::ParameterTextElement::start().
CPlotSpecification* SCopasiXMLParserCommon::pCurrentPlot |
Pointer to the currently processed plot
Definition at line 244 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ListOfPlotItemsElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CCopasiXMLParser::ListOfPlotsElement::end(), CCopasiXMLParser::PlotItemElement::start(), and CCopasiXMLParser::PlotSpecificationElement::start().
CPlotItem* SCopasiXMLParserCommon::pCurrentPlotItem |
Pointer to the currently processed plot item.
Definition at line 249 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::ListOfChannelsElement::end(), CCopasiXMLParser::ListOfPlotItemsElement::end(), CCopasiXMLParser::ListOfPlotsElement::end(), CCopasiXMLParser::PlotItemElement::start(), and CCopasiXMLParser::PlotSpecificationElement::start().
CCopasiTask* SCopasiXMLParserCommon::pCurrentTask |
Pointer to the currently processed task
Definition at line 217 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ListOfTasksElement::end(), CCopasiXMLParser::ParameterGroupElement::end(), CCopasiXMLParser::TaskElement::end(), CCopasiXMLParser::ReportInstanceElement::start(), CCopasiXMLParser::MethodElement::start(), and CCopasiXMLParser::TaskElement::start().
CLCurve* SCopasiXMLParserCommon::pCurve |
CCopasiDataModel* SCopasiXMLParserCommon::pDataModel |
A pointer to the datamodel.
Definition at line 312 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::setDatamodel(), CCopasiXMLParser::ModelElement::start(), and CCopasiXMLParser::SBMLReferenceElement::start().
CEvent* SCopasiXMLParserCommon::pEvent |
Pointer to the currently processed event
Definition at line 168 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::EventElement::end(), CCopasiXMLParser::EventElement::start(), and CCopasiXMLParser::AssignmentElement::start().
CEventAssignment* SCopasiXMLParserCommon::pEventAssignment |
Pointer to the currently processed event assignment
Definition at line 173 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::AssignmentElement::end(), and CCopasiXMLParser::AssignmentElement::start().
CFunction* SCopasiXMLParserCommon::pFunction |
Pointer to the currently processed function.
Definition at line 126 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::KineticLawElement::end(), CCopasiXMLParser::ListOfParameterDescriptionsElement::end(), CCopasiXMLParser::FunctionElement::end(), CCopasiXMLParser::KineticLawElement::start(), CCopasiXMLParser::ParameterDescriptionElement::start(), and CCopasiXMLParser::FunctionElement::start().
CCopasiVectorN< CFunction >* SCopasiXMLParserCommon::pFunctionList |
Pointer to a vector of functions which has been loaded or is to be saved. The ownership is handed to the user.
Definition at line 121 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::COPASIElement::end(), CCopasiXMLParser::ListOfFunctionsElement::end(), CCopasiXMLParser::FunctionElement::end(), CCopasiXMLParser::getObjectFromName(), CCopasiXMLParser::setFunctionList(), CCopasiXMLParser::ListOfFunctionsElement::start(), and CCopasiXMLParser::FunctionElement::start().
CFunctionParameter* SCopasiXMLParserCommon::pFunctionVariable |
Pointer to the currently processed function.
Definition at line 131 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::SourceParameterElement::start(), and CCopasiXMLParser::CallParameterElement::start().
CLGeneralGlyph* SCopasiXMLParserCommon::pGeneralGlyph |
Definition at line 278 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), and CCopasiXMLParser::AdditionalGOElement::start().
CLGradientBase* SCopasiXMLParserCommon::pGradient |
Definition at line 283 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::LinearGradientElement::end(), CCopasiXMLParser::RadialGradientElement::end(), CCopasiXMLParser::GradientStopElement::start(), CCopasiXMLParser::LinearGradientElement::start(), and CCopasiXMLParser::RadialGradientElement::start().
CLGroup* SCopasiXMLParserCommon::pGroup |
Definition at line 286 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::GroupElement::end(), CCopasiXMLParser::ImageElement::start(), CCopasiXMLParser::RectangleElement::start(), CCopasiXMLParser::EllipseElement::start(), CCopasiXMLParser::TextElement::start(), CCopasiXMLParser::RenderCurveElement::start(), CCopasiXMLParser::PolygonElement::start(), and CCopasiXMLParser::GroupElement::start().
SCopasiXMLGUI* SCopasiXMLParserCommon::pGUI |
Definition at line 307 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::COPASIElement::end(), CCopasiXMLParser::setGUI(), CCopasiXMLParser::COPASIElement::start(), CCopasiXMLParser::ListOfSlidersElement::start(), and CCopasiXMLParser::SliderElement::start().
CListOfLayouts* SCopasiXMLParserCommon::pLayoutList |
Pointer to a list of Layouts which has been loaded or is to be saved. The ownership is handed to the user.
Definition at line 266 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::ListOfLayoutsElement::end(), CCopasiXMLParser::getLayoutList(), CCopasiXMLParser::setLayoutList(), CCopasiXMLParser::ListOfLayoutsElement::start(), and CCopasiXMLParser::GlobalRenderInformationElement::start().
CLLineEnding* SCopasiXMLParserCommon::pLineEnding |
Definition at line 284 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::LineEndingElement::end(), CCopasiXMLParser::LineEndingElement::start(), CCopasiXMLParser::GroupElement::start(), and CCopasiXMLParser::BoundingBoxElement::start().
CLLineSegment* SCopasiXMLParserCommon::pLineSegment |
Definition at line 280 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::CurveElement::end(), and CCopasiXMLParser::CurveElement::start().
std::vector<CLRenderPoint*>* SCopasiXMLParserCommon::pListOfCurveElements |
Definition at line 288 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::RenderCurveElement::end(), CCopasiXMLParser::PolygonElement::end(), CCopasiXMLParser::RenderCurveElement::start(), CCopasiXMLParser::PolygonElement::start(), and CCopasiXMLParser::CurveElementElement::start().
CLMetabGlyph* SCopasiXMLParserCommon::pMetaboliteGlyph |
Definition at line 274 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), and CCopasiXMLParser::MetaboliteGlyphElement::start().
CLMetabReferenceGlyph* SCopasiXMLParserCommon::pMetaboliteReferenceGlyph |
Definition at line 281 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), and CCopasiXMLParser::MetaboliteReferenceGlyphElement::start().
CModel* SCopasiXMLParserCommon::pModel |
The model which is build during parsing.
Definition at line 105 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::ListOfModelParameterSetsElement::end(), CCopasiXMLParser::InitialStateElement::end(), CCopasiXMLParser::ModelElement::end(), CCopasiXMLParser::getModel(), CCopasiXMLParser::getObjectFromName(), CCopasiXMLParser::ModelParameterSetElement::start(), CCopasiXMLParser::ListOfModelParameterSetsElement::start(), CCopasiXMLParser::ReactionElement::start(), CCopasiXMLParser::ListOfReactionsElement::start(), CCopasiXMLParser::MetaboliteElement::start(), CCopasiXMLParser::CompartmentElement::start(), CCopasiXMLParser::ListOfCompartmentsElement::start(), CCopasiXMLParser::ModelValueElement::start(), CCopasiXMLParser::EventElement::start(), CCopasiXMLParser::ModelElement::start(), and CCopasiXMLParser::TaskElement::start().
COutputDefinitionVector* SCopasiXMLParserCommon::pPlotList |
Pointer to a vector of plots which has been loaded or is to be saved. The ownership is handed to the user.
Definition at line 207 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::ListOfPlotsElement::end(), CCopasiXMLParser::getPlotList(), and CCopasiXMLParser::ListOfPlotsElement::start().
CReaction* SCopasiXMLParserCommon::pReaction |
Pointer to the currently processed reaction.
Definition at line 163 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::KineticLawElement::end(), CCopasiXMLParser::ReactionElement::end(), CCopasiXMLParser::KineticLawElement::start(), CCopasiXMLParser::ConstantElement::start(), CCopasiXMLParser::ListOfConstantsElement::start(), CCopasiXMLParser::ModifierElement::start(), CCopasiXMLParser::ProductElement::start(), CCopasiXMLParser::SubstrateElement::start(), and CCopasiXMLParser::ReactionElement::start().
CLReactionGlyph* SCopasiXMLParserCommon::pReactionGlyph |
Definition at line 275 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::MetaboliteReferenceGlyphElement::start(), and CCopasiXMLParser::ReactionGlyphElement::start().
CLRenderInformationBase* SCopasiXMLParserCommon::pRenderInformation |
Definition at line 282 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::LinearGradientElement::end(), CCopasiXMLParser::RadialGradientElement::end(), CCopasiXMLParser::LocalRenderInformationElement::end(), CCopasiXMLParser::GlobalRenderInformationElement::end(), CCopasiXMLParser::ColorDefinitionElement::start(), CCopasiXMLParser::LineEndingElement::start(), CCopasiXMLParser::LocalStyleElement::start(), CCopasiXMLParser::GlobalStyleElement::start(), CCopasiXMLParser::LocalRenderInformationElement::start(), and CCopasiXMLParser::GlobalRenderInformationElement::start().
CReportDefinition* SCopasiXMLParserCommon::pReport |
Pointer to the currently processed report
Definition at line 212 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::HeaderElement::end(), CCopasiXMLParser::BodyElement::end(), CCopasiXMLParser::FooterElement::end(), CCopasiXMLParser::TableElement::end(), CCopasiXMLParser::ReportElement::end(), CCopasiXMLParser::TableElement::start(), and CCopasiXMLParser::ReportElement::start().
CReportDefinitionVector* SCopasiXMLParserCommon::pReportList |
Pointer to a vector of reports which has been loaded or is to be saved. The ownership is handed to the user.
Definition at line 201 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::getReportList(), CCopasiXMLParser::ListOfReportsElement::start(), and CCopasiXMLParser::ReportElement::start().
CLStyle* SCopasiXMLParserCommon::pStyle |
Definition at line 285 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::LocalStyleElement::end(), CCopasiXMLParser::GlobalStyleElement::end(), CCopasiXMLParser::LocalStyleElement::start(), CCopasiXMLParser::GlobalStyleElement::start(), and CCopasiXMLParser::GroupElement::start().
CCopasiVectorN< CCopasiTask >* SCopasiXMLParserCommon::pTaskList |
Pointer to a vector of tasks which has been loaded or is to be saved. The ownership is handed to the user.
Definition at line 195 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::ListOfTasksElement::end(), CCopasiXMLParser::getObjectFromName(), CCopasiXMLParser::getTaskList(), CCopasiXMLParser::ListOfTasksElement::start(), and CCopasiXMLParser::TaskElement::start().
CLText* SCopasiXMLParserCommon::pText |
Definition at line 287 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::TextElement::end(), and CCopasiXMLParser::TextElement::start().
CLTextGlyph* SCopasiXMLParserCommon::pTextGlyph |
Definition at line 276 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), and CCopasiXMLParser::TextGlyphElement::start().
CVersion* SCopasiXMLParserCommon::pVersion |
The version of the parsed file
Definition at line 100 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::EventElement::start(), and CCopasiXMLParser::COPASIElement::start().
std::map<std::string , std::vector < std::pair < std::vector <CRegisteredObjectName >*, size_t > > > SCopasiXMLParserCommon::reportReferenceMap |
A map that stores a vector of pairs of header,body or footer addresses with the index together with the key to the reference.
Definition at line 305 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ListOfReportsElement::end(), CCopasiXMLParser::HeaderElement::end(), CCopasiXMLParser::BodyElement::end(), and CCopasiXMLParser::FooterElement::end().
std::map< std::string, std::vector< std::string > > SCopasiXMLParserCommon::SourceParameterKeys |
The keys of the source parameters for a call parameter.
Definition at line 178 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::KineticLawElement::end(), and CCopasiXMLParser::SourceParameterElement::start().
std::vector< CModelEntity * > SCopasiXMLParserCommon::StateVariableList |
A map relating StateVariables to model entities.
Definition at line 189 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::InitialStateElement::end(), CCopasiXMLParser::StateTemplateVariableElement::start(), and CCopasiXMLParser::StateTemplateElement::start().
std::map<std::string , std::vector < CCopasiTask* > > SCopasiXMLParserCommon::taskReferenceMap |
A map that stores a vector of tasks that reference a certain key together with the key to the reference.
Definition at line 299 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::ListOfReportsElement::end(), and CCopasiXMLParser::ReportInstanceElement::start().
std::vector< std::string > SCopasiXMLParserCommon::UnmappedKeyParameters |
Vector of parameters of type key which could not be updated due to missing target objects at time of read.
Definition at line 260 of file CCopasiXMLParser.h.
Referenced by CCopasiXMLParser::CCopasiXMLParser(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CCopasiXMLParser::ParameterGroupElement::end(), CCopasiXMLParser::COPASIElement::end(), and CCopasiXMLParser::ParameterElement::start().