CopasiUI3Window Class Reference

#include <copasiui3window.h>

Inheritance diagram for CopasiUI3Window:

Collaboration diagram for CopasiUI3Window:

Public Slots
void	autoSave ()
void	openInitialDocument (const QString &file)
void	slotFileOpen (QString file=QString::null)
void	slotObjectBrowserDialogWasClosed ()
void	slotShowSliders (bool flag)

Signals
void	signalLoadFile (QString newFile)
void	signalQuit ()

Public Member Functions
void	addWindow (QMainWindow *pWindow)
void	checkPendingMessages ()
void	disableSliders (bool disable)
void	exportSBMLToString (std::string &SBML)
DataModelGUI *	getDataModel ()
ListViews *	getMainWidget ()
const QList< QPointer < QMainWindow > > &	getWindows () const
void	importSBMLFromString (const std::string &sbmlDocumentText)
const bool &	messageShown () const
void	removeWindow (QMainWindow *pWindow)
void	setMessageShown (const bool &shown)
void	suspendAutoSave (const bool &suspend)
	~CopasiUI3Window ()

Static Public Member Functions
static CopasiUI3Window *	create ()
static CopasiUI3Window *	getMainWindow ()
static bool	isMainThread ()

Protected Slots
void	about ()
void	aboutQt ()
void	customEvent (QEvent *)
void	license ()
void	listViewsFolderChanged (const QModelIndex &index)
void	newDoc ()
void	slotActivateWindowTriggered (QAction *action)
void	slotApplyInitialState ()
void	slotCapture ()
void	slotCheckModel ()
void	slotCloseAllWindows ()
void	slotConvertToIrreversible ()
void	slotExpandModel ()
void	slotExportMathModel ()
void	slotExportMathModelFinished (bool success)
void	slotExportSBML ()
void	slotExportSBMLFinished (bool success)
void	slotExportSBMLToStringFinished (bool success)
void	slotFileExamplesCopasiFiles (QString file=QString::null)
void	slotFileExamplesSBMLFiles (QString file=QString::null)
void	slotFileOpenFinished (bool success)
void	slotFilePrint ()
void	slotFileSave ()
void	slotFileSaveAs (QString str=QString::null)
void	slotFileSaveFinished (bool success)
void	slotFontSelection ()
void	slotFrameworkChanged (int index)
void	slotFunctionDBLoad (QString str=QString::null)
void	slotFunctionDBSave (QString str=QString::null)
void	slotImportSBML (QString file=QString::null)
void	slotImportSBMLFinished (bool success)
void	slotImportSBMLFromStringFinished (bool success)
void	slotOpenRecentFile (QAction *pAction)
void	slotOpenRecentSBMLFile (QAction *pAction)
void	slotPreferences ()
void	slotQuit ()
void	slotQuitFinished (bool success)
void	slotShowObjectBrowserDialog (bool flag)
void	slotTutorialWizard ()
void	slotUpdateInitialState ()
void	slotUpdateMIRIAM ()
void	slotUpdateMIRIAMFinished (bool)

Protected Member Functions
virtual void	closeEvent (QCloseEvent *e)
void	dragEnterEvent (QDragEnterEvent *event)
void	dropEvent (QDropEvent *event)

Private Member Functions
void	CleanUp ()
	CopasiUI3Window ()
void	createActions ()
void	createMenuBar ()
void	createToolBar ()
void	refreshRecentFileMenu ()
void	refreshRecentSBMLFileMenu ()
void	refreshWindowsMenu ()
void	setApplicationFont ()
void	updateTitle ()

Private Attributes
QString	FixedTitle
bool	mCommitRequired
bool	mMessageShown
QString	mNewFile
QAction *	mpaApplyInitialState
QAction *	mpaCapture
QAction *	mpaCheckModel
QAction *	mpaCloseAllWindows
QAction *	mpaExpandModel
QAction *	mpaExportODE
QAction *	mpaExportSBML
QAction *	mpaFontSelectionDialog
QAction *	mpaFunctionDBLoad
QAction *	mpaFunctionDBSave
QAction *	mpaImportSBML
QAction *	mpaNew
QAction *	mpaObjectBrowser
QAction *	mpaOpen
QAction *	mpaOpenCopasiFiles
QAction *	mpaOpenSBMLFiles
QAction *	mpaQuit
QAction *	mpaSave
QAction *	mpaSaveAs
QAction *	mpaSliders
QAction *	mpaUpdateInitialState
QAction *	mpaUpdateMIRIAM
QTimer *	mpAutoSaveTimer
QComboBox *	mpBoxSelectFramework
DataModelGUI *	mpDataModelGUI
ListViews *	mpListView
QThread *	mpMainThread
QMenu *	mpMenuExamples
QMenu *	mpMenuRecentFiles
QMenu *	mpMenuRecentSBMLFiles
CMIRIAMResources *	mpMIRIAMResources
ObjectBrowserDialog *	mpObjectBrowser
QActionGroup *	mpRecentFilesActionGroup
QActionGroup *	mpRecentSBMLFilesActionGroup
SliderDialog *	mpSliders
QMenu *	mpTools
QActionGroup *	mpWindowsActionGroup
QMenu *	mpWindowsMenu
bool	mQuitApplication
QMap< QAction *, int >	mRecentFilesActionMap
QMap< QAction *, int >	mRecentSBMLFilesActionMap
bool	mSaveAsRequired
bool	mSliderDialogEnabled
bool	mSuspendAutoSave
QList< QPointer< QMainWindow > >	mWindows

Static Private Attributes
static CopasiUI3Window *	pMainWindow = NULL

Detailed Description

Definition at line 54 of file copasiui3window.h.

Constructor & Destructor Documentation

CopasiUI3Window::~CopasiUI3Window

(

)

Definition at line 272 of file copasiui3window.cpp.

References DataModelGUI::deregisterListView(), mpDataModelGUI, mpListView, mpSliders, mWindows, and pdelete.

{
#ifdef COPASI_SBW_INTEGRATION
  sbwDisconnect();
#endif // COPASI_SBW_INTEGRATION

  QList< QPointer<QMainWindow> >::iterator it = mWindows.begin();
  QList< QPointer<QMainWindow> >::iterator end = mWindows.end();

  for (; it != end; ++it)
    {
      QPointer<QMainWindow> current = *it;

      if (current == NULL)  continue;

      if (current != this)
        current->close();
    }

  pdelete(mpSliders);
  mpDataModelGUI->deregisterListView(mpListView);
  pdelete(mpDataModelGUI);
  pdelete(mpListView);
}

CopasiUI3Window::CopasiUI3Window ( )

private

Constructs a CopasiUI window which is a child of 'parent', with the name 'name' and widget flags set to 'f'.

Parameters

parent	The widget which this window is a child of.
name	The object name is a text that can be used to identify this QObject. It's particularly useful in conjunction with the Qt Designer. You can find an object by name (and type) using child(), and more than one using queryList().
flags	Flags for this widget. Refer Qt::WidgetFlags of Qt documentation for more information about these flags.

Definition at line 150 of file copasiui3window.cpp.

References AutoSaveInterval, CQIconResource::copasi, createActions(), createMenuBar(), createToolBar(), FixedTitle, FROM_UTF8, ListViews::getCurrentItemId(), CCopasiRootContainer::getDatamodelList(), CQIconResource::icon(), listViewsFolderChanged(), mpaExportODE, mpaExportSBML, mpaSave, mpaSaveAs, mpAutoSaveTimer, mpDataModelGUI, mpListView, mpSliders, mSliderDialogEnabled, mWindows, DataModelGUI::registerListView(), setApplicationFont(), SliderDialog::setChanged(), SliderDialog::setCurrentFolderId(), SliderDialog::setParentWindow(), ListViews::switchToOtherWidget(), updateTitle(), and CVersion::VERSION.

Referenced by create().

                                :
  QMainWindow(),
  mpDataModelGUI(NULL),
  mpListView(NULL),
  mpBoxSelectFramework(NULL),
  mpSliders(NULL),
  mpObjectBrowser(NULL),
  mSaveAsRequired(true),
  mpAutoSaveTimer(NULL),
  mSuspendAutoSave(false),
  mpMenuExamples(NULL),
  mpMenuRecentFiles(NULL),
  mRecentFilesActionMap(),
  mpRecentFilesActionGroup(NULL),
  mpMenuRecentSBMLFiles(NULL),
  mRecentSBMLFilesActionMap(),
  mpRecentSBMLFilesActionGroup(NULL),
  mpWindowsActionGroup(NULL),
  mpMIRIAMResources(NULL),
  mpMainThread(QThread::currentThread()),
  mNewFile(),
  mCommitRequired(true),
  mQuitApplication(false),
  mSliderDialogEnabled(false),
  mMessageShown(false),
  mWindows()

#ifdef COPASI_SBW_INTEGRATION
  , mpSBWModule(NULL)
  , mSBWAnalyzerModules()
  , mSBWAnalyzerServices()
  , mSBWActionMap()
  , mpSBWActionGroup(NULL)
  , mpSBWMenu(NULL)
  , mpSBWAction(NULL)
  , mSBWIgnoreShutdownEvent(true)
#endif // COPASI_SBW_INTEGRATION

#ifdef COPASI_SEDML
  , mpMenuSEDMLSupport(NULL)
  , mpMenuRecentSEDMLFiles(NULL)
  , mRecentSEDMLFilesActionMap()
  , mpRecentSEDMLFilesActionGroup(NULL)
#endif //COPASI_SEDML support

{
  // set destructive close
  this->setAttribute(Qt::WA_DeleteOnClose);

  // Add this window to the list of windows
  mWindows.append(this);

#ifndef Darwin
  setWindowIcon(CQIconResource::icon(CQIconResource::copasi));
#endif // not Darwin

  // Set the window caption/title
  FixedTitle = "COPASI ";
  FixedTitle += FROM_UTF8(CVersion::VERSION.getVersion());
  updateTitle();

  createActions();
  createToolBar(); // creates a tool bar
  createMenuBar();  // creates a menu bar

  setIconSize(QSize(18, 20));

  mpaSave->setEnabled(false);
  mpaSaveAs->setEnabled(false);
  mpaExportSBML->setEnabled(false);
  mpaExportODE->setEnabled(false);

  //TODO SEDML
#ifdef COPASI_SEDML
  mpaExportSEDML->setEnabled(false);
#endif

  if (!mpDataModelGUI)
    {
      // create the data model
      mpDataModelGUI = new DataModelGUI(this);
    }

  mpListView = new ListViews(this);

  connect(mpListView, SIGNAL(signalFolderChanged(const QModelIndex &)), this, SLOT(listViewsFolderChanged(const QModelIndex &)));

  mpDataModelGUI->registerListView(mpListView);
  mpListView->show();
  this->setCentralWidget(mpListView);

  //create sliders window
  this->mpSliders = new SliderDialog(NULL);
  this->mpSliders->setParentWindow(this);
  size_t id = mpListView->getCurrentItemId();
  this->mpSliders->setCurrentFolderId(id);
  this->mpSliders->resize(320, 350);
  this->mSliderDialogEnabled = this->mpSliders->isEnabled();

  resize(800, 600);
  show();

  mpListView->switchToOtherWidget(0, "");

  // Assure that the changed flag is still false;
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  (*CCopasiRootContainer::getDatamodelList())[0]->changed(false);
  this->mpSliders->setChanged(false);

  mpAutoSaveTimer = new QTimer(this);
  mpAutoSaveTimer->start(AutoSaveInterval); // every 10 minutes

  // TODO CRITICAL We need to disable autosave to avoid race conditions.
  // connect(mpAutoSaveTimer, SIGNAL(timeout()), this, SLOT(autoSave()));
  // mpDataModelGUI->notify(ListViews::FUNCTION, ListViews::ADD, "");

  setApplicationFont();

  // drop acceptance
  setAcceptDrops(true);
}

Member Function Documentation

void CopasiUI3Window::about ( )

protectedslot

Definition at line 1240 of file copasiui3window.cpp.

References FixedTitle, FROM_UTF8, AboutDialog::text, and CVersion::VERSION.

Referenced by createMenuBar().

{
  QString text =
    QString(AboutDialog::text)
    .arg(FROM_UTF8(CVersion::VERSION.getVersion()))
    .arg(LIBSBML_DOTTED_VERSION);

  AboutDialog* aboutDialog = new AboutDialog(this, text, 76, 30);
  aboutDialog->setWindowTitle(FixedTitle);
  aboutDialog->exec();
}

void CopasiUI3Window::aboutQt ( )

protectedslot

Definition at line 1259 of file copasiui3window.cpp.

Referenced by createMenuBar().

{
  QMessageBox::aboutQt(this, "Qt");
}

void CopasiUI3Window::addWindow

(

QMainWindow *

pWindow

)

Definition at line 1966 of file copasiui3window.cpp.

References mWindows, and refreshWindowsMenu().

Referenced by CWindowInterface::addToMainWindow(), and slotShowSliders().

{
  mWindows.append(pWindow);
  refreshWindowsMenu();
}

void CopasiUI3Window::autoSave ( )

slot

Definition at line 1823 of file copasiui3window.cpp.

References AutoSaveInterval, CCopasiRootContainer::getDatamodelList(), mpAutoSaveTimer, and mSuspendAutoSave.

Referenced by TaskWidget::commonBeforeRunTask().

{
  // TODO CRITICAL This needs to be moved into a sub thread so
  // that a progress dialog can be displayed and the user can interrupt.
  if (!mSuspendAutoSave)
    {
      mSuspendAutoSave = true;
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
      (*CCopasiRootContainer::getDatamodelList())[0]->autoSave();
      mSuspendAutoSave = false;
    }

  mpAutoSaveTimer->setInterval(AutoSaveInterval); // restart the timer
}

void CopasiUI3Window::checkPendingMessages

(

)

Definition at line 1744 of file copasiui3window.cpp.

References FROM_UTF8, CCopasiMessage::getLastMessage(), CCopasiMessage::getNumber(), CCopasiMessage::getText(), CCopasiMessage::getType(), CQMessageBox::information(), MCCopasiMessage, and CQMessageBox::setFilteredText().

Referenced by slotExportSBMLFinished(), slotImportSBMLFinished(), slotImportSBMLFromStringFinished(), and slotUpdateMIRIAMFinished().

{
  CCopasiMessage msg_pending = CCopasiMessage::getLastMessage();

  if (msg_pending.getNumber() != MCCopasiMessage + 1)
    {
      QString text;
      QString filteredText;
      unsigned int numMessages = 0;
      unsigned int numFilteredMessages = 0;

      while (msg_pending.getNumber() != MCCopasiMessage + 1)
        {
          if (msg_pending.getType() & 128)
            {
              ++numFilteredMessages;
              filteredText += "\n";
              filteredText += FROM_UTF8(msg_pending.getText());
            }
          else
            {
              ++numMessages;
              text += "\n";
              text += FROM_UTF8(msg_pending.getText());
            }

          msg_pending = CCopasiMessage::getLastMessage();
        }

      if (numFilteredMessages != 0)
        {
          if (text.isEmpty())
            text = "There were no serious issues encountered during the import of SBML. "
                   "However some minor issues have occurred, which can be viewed in the Minor "
                   "Issues tab.";

          CQMessageBox box(QMessageBox::Information,
                           QString("COPASI Message"), text, QMessageBox::Ok, this);
          box.setDefaultButton(QMessageBox::Ok);
          box.setFilteredText(filteredText);
          box.exec();
        }
      else
        {
          CQMessageBox::information(this, QString("COPASI Message"), text,
                                    QMessageBox::Ok, QMessageBox::Ok);
        }
    }
}

void CopasiUI3Window::CleanUp ( )

private

Definition at line 1227 of file copasiui3window.cpp.

References COptions::getValue(), CDirEntry::remove(), CDirEntry::removeFiles(), and signalQuit().

Referenced by slotQuitFinished().

{
  emit signalQuit();
  std::string tempDir;
  COptions::getValue("Tmp", tempDir);

  CDirEntry::removeFiles("*.cps", tempDir);
  CDirEntry::remove(tempDir);
}

void CopasiUI3Window::closeEvent ( QCloseEvent *  e )

protectedvirtual

Definition at line 1216 of file copasiui3window.cpp.

References slotQuit().

{
  // We handle this internally.
  ce->ignore();

  slotQuit();

  return;
}

CopasiUI3Window * CopasiUI3Window::create ( )

static

Definition at line 117 of file copasiui3window.cpp.

References COptions::compareValue(), CopasiUI3Window(), and pMainWindow.

Referenced by main().

{
  CopasiUI3Window * pWindow = NULL;

  pWindow = new CopasiUI3Window;

#ifdef COPASI_SBW_INTEGRATION

  if (pWindow != NULL &&
      COptions::compareValue("SBWRegister", true))
    {
      pWindow->sbwConnect();
      pWindow->sbwRegister();
    }

#endif // COPASI_SBW_INTEGRATION

  pMainWindow = pWindow;

  return pWindow;
}

void CopasiUI3Window::createActions ( )

private

Definition at line 297 of file copasiui3window.cpp.

References CQIconResource::captureImage, CQIconResource::checkMark, CQIconResource::fileAdd, CQIconResource::fileExport, CQIconResource::fileNew, CQIconResource::fileOpen, CQIconResource::fileSave, CQIconResource::fileSaveas, CQIconResource::icon(), CQIconResource::isToS, CQIconResource::miriam, mpaApplyInitialState, mpaCapture, mpaCheckModel, mpaCloseAllWindows, mpaExpandModel, mpaExportODE, mpaExportSBML, mpaFontSelectionDialog, mpaFunctionDBLoad, mpaFunctionDBSave, mpaImportSBML, mpaNew, mpaObjectBrowser, mpaOpen, mpaOpenCopasiFiles, mpaOpenSBMLFiles, mpaQuit, mpaSave, mpaSaveAs, mpaSliders, mpaUpdateInitialState, mpaUpdateMIRIAM, newDoc(), CQIconResource::slider, slotApplyInitialState(), slotCapture(), slotCheckModel(), slotCloseAllWindows(), slotExpandModel(), slotExportMathModel(), slotExportSBML(), slotFileExamplesCopasiFiles(), slotFileExamplesSBMLFiles(), slotFileOpen(), slotFileSave(), slotFileSaveAs(), slotFontSelection(), slotFunctionDBLoad(), slotFunctionDBSave(), slotImportSBML(), slotQuit(), slotShowObjectBrowserDialog(), slotShowSliders(), slotUpdateInitialState(), slotUpdateMIRIAM(), and CQIconResource::sToIs.

Referenced by CopasiUI3Window().

{
  //TODO: use the QKeySequence standard shortcuts
  //TODO: add tool tips, status tips etc.

  mpaNew = new QAction(CQIconResource::icon(CQIconResource::fileNew), "&New", this);
  connect(mpaNew, SIGNAL(activated()), this, SLOT(newDoc()));
  mpaNew->setShortcut(Qt::CTRL + Qt::Key_N);

  mpaOpen = new QAction(CQIconResource::icon(CQIconResource::fileOpen), "&Open...", this);
  connect(mpaOpen, SIGNAL(activated()), this, SLOT(slotFileOpen()));
  mpaOpen->setShortcut(Qt::CTRL + Qt::Key_O);

  mpaOpenCopasiFiles = new QAction(CQIconResource::icon(CQIconResource::fileOpen), "COP&ASI Files...", this);
  connect(mpaOpenCopasiFiles, SIGNAL(activated()), this, SLOT(slotFileExamplesCopasiFiles()));
  // mpaOpenCopasiFiles->setShortcut(Qt::CTRL + Qt::Key_1);

  mpaOpenSBMLFiles = new QAction(CQIconResource::icon(CQIconResource::fileOpen), "S&BML Files...", this);
  connect(mpaOpenSBMLFiles, SIGNAL(activated()), this, SLOT(slotFileExamplesSBMLFiles()));
  // mpaOpenSBMLFiles->setShortcut(Qt::CTRL + Qt::Key_2);

  mpaSave = new QAction(CQIconResource::icon(CQIconResource::fileSave), "&Save", this);
  connect(mpaSave, SIGNAL(activated()), this, SLOT(slotFileSave()));
  mpaSave->setShortcut(Qt::CTRL + Qt::Key_S);

  mpaSaveAs = new QAction(CQIconResource::icon(CQIconResource::fileSaveas), "Save &As...", this);
  connect(mpaSaveAs, SIGNAL(activated()), this, SLOT(slotFileSaveAs()));
  mpaSaveAs->setShortcut(Qt::SHIFT + Qt::CTRL + Qt::Key_S);

  mpaImportSBML = new QAction(CQIconResource::icon(CQIconResource::fileOpen), "&Import SBML...", this);
  connect(mpaImportSBML, SIGNAL(activated()), this, SLOT(slotImportSBML()));
  mpaImportSBML->setShortcut(Qt::CTRL + Qt::Key_I);

  mpaExportSBML = new QAction(CQIconResource::icon(CQIconResource::fileExport), "&Export SBML...", this);
  connect(mpaExportSBML, SIGNAL(activated()), this, SLOT(slotExportSBML()));
  mpaExportSBML->setShortcut(Qt::CTRL + Qt::Key_E);

  mpaExportODE = new QAction(CQIconResource::icon(CQIconResource::fileExport), "Export ODEs...", this);
  connect(mpaExportODE, SIGNAL(activated()), this, SLOT(slotExportMathModel()));
  mpaExportODE->setShortcut(Qt::CTRL + Qt::Key_M);

  mpaQuit = new QAction("&Quit", this);
  connect(mpaQuit, SIGNAL(activated()), this, SLOT(slotQuit()));
  mpaQuit->setShortcut(Qt::CTRL + Qt::Key_Q);

  mpaSliders = new QAction(CQIconResource::icon(CQIconResource::slider), "Show sliders", this);
  mpaSliders->setCheckable(true);
  connect(mpaSliders, SIGNAL(toggled(bool)), this, SLOT(slotShowSliders(bool)));

  mpaObjectBrowser = new QAction("Object &Browser", this);
  mpaObjectBrowser->setCheckable(true);
  connect(mpaObjectBrowser, SIGNAL(toggled(bool)), this, SLOT(slotShowObjectBrowserDialog(bool)));

  mpaCheckModel = new QAction(CQIconResource::icon(CQIconResource::checkMark), "Check model", this);
  connect(mpaCheckModel, SIGNAL(activated()), this, SLOT(slotCheckModel()));

  mpaUpdateMIRIAM = new QAction(CQIconResource::icon(CQIconResource::miriam), "Update MIRIAM", this);
  connect(mpaUpdateMIRIAM, SIGNAL(activated()), this, SLOT(slotUpdateMIRIAM()));

  mpaApplyInitialState = new QAction(CQIconResource::icon(CQIconResource::isToS), "Apply initial state", this);
  connect(mpaApplyInitialState, SIGNAL(activated()), this, SLOT(slotApplyInitialState()));

  mpaUpdateInitialState = new QAction(CQIconResource::icon(CQIconResource::sToIs), "Update initial state from current state", this);
  connect(mpaUpdateInitialState, SIGNAL(activated()), this, SLOT(slotUpdateInitialState()));

  mpaCapture = new QAction(CQIconResource::icon(CQIconResource::captureImage), "Capture the main window", this);
  connect(mpaCapture, SIGNAL(activated()), this, SLOT(slotCapture()));

  mpaExpandModel = new QAction("Create array of compartments (debug version)", this);
  connect(mpaExpandModel, SIGNAL(activated()), this, SLOT(slotExpandModel()));

  mpaFontSelectionDialog = new QAction("Select the Application Font", this);
  connect(mpaFontSelectionDialog, SIGNAL(activated()), this, SLOT(slotFontSelection()));

  //TODO SEDML
#ifdef COPASI_SEDML
  mpaOpenSEDMLFiles = new QAction(CQIconResource::icon(CQIconResource::fileOpen), "S&ED-ML Files...", this);
  connect(mpaOpenSEDMLFiles, SIGNAL(activated()), this, SLOT(slotFileExamplesSEDMLFiles()));
  // mpaOpenSEDMLFiles->setShortcut(Qt::CTRL + Qt::Key_3);

  mpaImportSEDML = new QAction(CQIconResource::icon(CQIconResource::fileOpen), "&Import SED-ML...", this);
  connect(mpaImportSEDML, SIGNAL(activated()), this, SLOT(slotImportSEDML()));
  // mpaImportSEDML->setShortcut(Qt::CTRL + Qt::Key_X);

  mpaExportSEDML = new QAction(CQIconResource::icon(CQIconResource::fileExport), "&Export SED-ML...", this);
  connect(mpaExportSEDML, SIGNAL(activated()), this, SLOT(slotExportSEDML()));
  // mpaExportSEDML->setShortcut(Qt::CTRL + Qt::Key_Z);
#endif
  //     QAction* mpaObjectBrowser;

#ifdef WITH_MERGEMODEL
  mpaAddModel = new QAction(CQIconResource::icon(CQIconResource::fileAdd), "&Add ...", this);
  mpaAddModel->setShortcut(Qt::SHIFT + Qt::CTRL + Qt::Key_A);
  connect(mpaAddModel, SIGNAL(activated()), this, SLOT(slotAddFileOpen()));

  mpaMergeModels = new QAction("&Merge ...", this);
  mpaMergeModels->setShortcut(Qt::SHIFT + Qt::CTRL + Qt::Key_M);
  connect(mpaMergeModels, SIGNAL(activated()), this, SLOT(slotMergeModels()));
#endif

  mpaCloseAllWindows = new QAction("Close all windows below:", this);
  connect(mpaCloseAllWindows, SIGNAL(activated()), this, SLOT(slotCloseAllWindows()));

  mpaFunctionDBLoad =  new QAction(CQIconResource::icon(CQIconResource::fileOpen), "Load Function DB...", this);
  connect(mpaFunctionDBLoad, SIGNAL(activated()), this, SLOT(slotFunctionDBLoad()));
  mpaFunctionDBSave =  new QAction(CQIconResource::icon(CQIconResource::fileSaveas), "Save Function DB...", this);
  connect(mpaFunctionDBSave, SIGNAL(activated()), this, SLOT(slotFunctionDBSave()));
}

void CopasiUI3Window::createMenuBar ( )

private

Definition at line 489 of file copasiui3window.cpp.

References about(), aboutQt(), license(), mpaApplyInitialState, mpaCapture, mpaCheckModel, mpaExpandModel, mpaExportODE, mpaExportSBML, mpaFontSelectionDialog, mpaFunctionDBLoad, mpaFunctionDBSave, mpaImportSBML, mpaNew, mpaObjectBrowser, mpaOpen, mpaOpenCopasiFiles, mpaOpenSBMLFiles, mpaQuit, mpaSave, mpaSaveAs, mpaSliders, mpaUpdateInitialState, mpaUpdateMIRIAM, mpMenuExamples, mpMenuRecentFiles, mpMenuRecentSBMLFiles, mpTools, mpWindowsMenu, refreshRecentFileMenu(), refreshRecentSBMLFileMenu(), refreshWindowsMenu(), slotConvertToIrreversible(), slotPreferences(), and slotTutorialWizard().

Referenced by CopasiUI3Window().

{

  QMenu * pFileMenu = menuBar()->addMenu("&File");

  pFileMenu->addAction(mpaNew);
  pFileMenu->addAction(mpaOpen);

  mpMenuExamples = pFileMenu->addMenu("Examples");
  mpMenuExamples->addAction(mpaOpenCopasiFiles);
  mpMenuExamples->addAction(mpaOpenSBMLFiles);

#ifdef COPASI_SEDML
  mpMenuExamples->addAction(mpaOpenSEDMLFiles);
#endif

  pFileMenu->addAction(mpaSave);
  pFileMenu->addAction(mpaSaveAs);

  pFileMenu->addSeparator();

  pFileMenu->addAction(mpaImportSBML);
  pFileMenu->addAction(mpaExportSBML);
  pFileMenu->addAction(mpaExportODE);

  //TODO SEDML
#ifdef COPASI_SEDML
  pFileMenu->addSeparator();
  mpMenuSEDMLSupport = pFileMenu->addMenu("SED-ML Support");
  mpMenuSEDMLSupport->addAction(mpaImportSEDML);
  mpMenuSEDMLSupport->addAction(mpaExportSEDML);

  mpMenuRecentSEDMLFiles = mpMenuSEDMLSupport->addMenu("Recent SED-ML Files");
  refreshRecentSEDMLFileMenu();
#endif

#ifdef WITH_MERGEMODEL
  pFileMenu->addAction(mpaAddModel);
  //pFileMenu->addAction(mpaMergeModels);
#endif

  pFileMenu->addSeparator();
  pFileMenu->addAction(mpaFunctionDBLoad);
  pFileMenu->addAction(mpaFunctionDBSave);

  pFileMenu->addSeparator();

  mpMenuRecentFiles = pFileMenu->addMenu("Recent Files");
  refreshRecentFileMenu();

  mpMenuRecentSBMLFiles = pFileMenu->addMenu("Recent SBML Files");
  refreshRecentSBMLFileMenu();

  pFileMenu->addSeparator();

  pFileMenu->addAction(mpaQuit);

  //****** tools menu **************

  mpTools = menuBar()->addMenu("&Tools");

  mpTools->addAction(mpaApplyInitialState);
  mpTools->addAction(mpaUpdateInitialState);
  mpTools->addAction(mpaSliders);
  mpTools->addAction(mpaCapture);
#ifdef WITH_MERGEMODEL
  mpTools->addAction(mpaMergeModels);
#endif

  mpTools->addSeparator();
  mpTools->addAction(mpaExpandModel);
#ifdef COPASI_DEBUG
  mpTools->addAction(mpaObjectBrowser);
  mpTools->addSeparator();
#endif // COPASI_DEBUG

  mpTools->addAction(mpaCheckModel);
  mpTools->addAction("&Convert to irreversible", this, SLOT(slotConvertToIrreversible()));

#ifdef WITH_PE_EVENT_CREATION
  mpTools->addAction("&Create Events For Timeseries Experiment", this, SLOT(slotCreateEventsForTimeseries()));
#endif

#ifdef COPASI_SBW_INTEGRATION
  // create and populate SBW menu
  mpSBWMenu = new QMenu("&SBW", this);
  mpSBWAction = mpTools->addMenu(mpSBWMenu);
#endif // COPASI_SBW_INTEGRATION

  mpTools->addSeparator();
  mpTools->addAction(mpaUpdateMIRIAM);
  mpTools->addAction("&Preferences", this, SLOT(slotPreferences()));
  mpTools->addAction(mpaFontSelectionDialog);

  //****** windows menu **************
  mpWindowsMenu =  menuBar()->addMenu("&Window");
  refreshWindowsMenu();

  //*******  help menu *****************

  menuBar()->addSeparator();

  QMenu * help = menuBar()->addMenu("&Help");

  help->addAction("Simple &Wizard", this, SLOT(slotTutorialWizard()));
  help->addSeparator();
  help->addAction("&About", this, SLOT(about()), Qt::Key_F1);
  help->addAction("&License", this, SLOT(license()));
  help->addAction("About &Qt", this, SLOT(aboutQt()));
  help->addSeparator();
  // help->addAction("What's &This", this, SLOT(whatsThis()), Qt::SHIFT + Qt::Key_F1);
}

void CopasiUI3Window::createToolBar ( )

private

Definition at line 457 of file copasiui3window.cpp.

References mpaApplyInitialState, mpaCapture, mpaCheckModel, mpaNew, mpaOpen, mpaSave, mpaSliders, mpaUpdateInitialState, mpaUpdateMIRIAM, mpBoxSelectFramework, and slotFrameworkChanged().

Referenced by CopasiUI3Window().

{
  QToolBar * tb = addToolBar("MainToolBar");

  tb->addAction(mpaNew);
  tb->addAction(mpaOpen);
  tb->addAction(mpaSave);
  tb->addAction(mpaCapture);
  tb->addAction(mpaSliders);
  tb->addAction(mpaCheckModel);
  tb->addAction(mpaApplyInitialState);
  tb->addAction(mpaUpdateInitialState);
  tb->addAction(mpaUpdateMIRIAM);

#ifdef WITH_MERGEMODEL
  tb->addAction(mpaAddModel);
  //tb->addAction(mpaMergeModels);
#endif

  tb->addSeparator();

  mpBoxSelectFramework = new QComboBox(tb);
  QStringList items;
  items << "Concentrations" << "Particle Numbers";
  mpBoxSelectFramework->addItems(items);
  tb->addWidget(mpBoxSelectFramework);

  connect(mpBoxSelectFramework, SIGNAL(activated(int)), this, SLOT(slotFrameworkChanged(int)));

  setUnifiedTitleAndToolBarOnMac(true);
}

void CopasiUI3Window::customEvent ( QEvent *  )

protectedslot

Definition at line 2727 of file copasiui3window.cpp.

{}

void CopasiUI3Window::disableSliders

(

bool

disable

)

The slider dialog has to be disabled before a task is run and reenabled afterwards. Actually the methods stores the state when the value true is passed and restores that state when the value false is passed.

Definition at line 2792 of file copasiui3window.cpp.

References mpSliders, mSliderDialogEnabled, and SliderDialog::updateAllSliders().

Referenced by CProgressBar::CProgressBar(), and CProgressBar::finish().

{
  if (disable)
    {
      this->mSliderDialogEnabled = this->mpSliders->isEnabled();
      this->mpSliders->setEnabled(false);
    }
  else
    {
      this->mpSliders->setEnabled(this->mSliderDialogEnabled);
      this->mpSliders->updateAllSliders();
    }
}

void CopasiUI3Window::dragEnterEvent ( QDragEnterEvent *  event )

protected

Definition at line 2731 of file copasiui3window.cpp.

{
  if (event->mimeData()->hasFormat("text/uri-list"))
    event->acceptProposedAction();
}

void CopasiUI3Window::dropEvent ( QDropEvent *  event )

protected

Definition at line 2762 of file copasiui3window.cpp.

References isProabablySBML(), slotFileOpen(), and slotImportSBML().

{
  QList<QUrl> urls = event->mimeData()->urls();

  if (urls.isEmpty())
    return;

  QString fileName = urls.first().toLocalFile();

  if (fileName.isEmpty())
    return;

  if (isProabablySBML(fileName))
    slotImportSBML(fileName);

#ifdef COPASI_SEDML
  else if (isProabablySBML(fileName))
    slotImportSEDML(fileName);

#endif
  else
    slotFileOpen(fileName);
}

void CopasiUI3Window::exportSBMLToString

(

std::string &

SBML

)

Definition at line 1932 of file copasiui3window.cpp.

References DataModelGUI::commit(), DataModelGUI::exportSBMLToString(), mpDataModelGUI, and slotExportSBMLToStringFinished().

{
  mpDataModelGUI->commit();

  if (mpDataModelGUI)
    {
      setCursor(Qt::WaitCursor);
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotExportSBMLToStringFinished(bool)));

      mpDataModelGUI->exportSBMLToString(SBML);
    }
}

DataModelGUI * CopasiUI3Window::getDataModel

(

)

Definition at line 1729 of file copasiui3window.cpp.

References mpDataModelGUI.

Referenced by SliderDialog::addSlider(), SliderDialog::createSlidersForFolder(), SliderDialog::updateAllSliders(), and Worker::Worker().

{return mpDataModelGUI;}

ListViews * CopasiUI3Window::getMainWidget

(

)

Definition at line 1739 of file copasiui3window.cpp.

References mpListView.

Referenced by Worker::finishedLoading(), Worker::getWidgetForTask(), SliderDialog::runCrossSectionTask(), SliderDialog::runLNATask(), SliderDialog::runMCATask(), SliderDialog::runOptimizationTask(), SliderDialog::runParameterEstimationTask(), SliderDialog::runScanTask(), SliderDialog::runSteadyStateTask(), SliderDialog::runTask(), SliderDialog::runTimeCourse(), and WizardDialog::textBrowser_anchorClicked().

{
  return mpListView;
}

CopasiUI3Window * CopasiUI3Window::getMainWindow ( )

static

Definition at line 105 of file copasiui3window.cpp.

References pMainWindow.

Referenced by CWindowInterface::addToMainWindow(), TaskWidget::commonAfterRunTask(), TaskWidget::commonBeforeRunTask(), COutputHandlerPlot::compile(), CProgressBar::CProgressBar(), CQLayoutThread::CQLayoutThread(), CQMessageBox::CQMessageBox(), CProgressBar::create(), CProgressBar::finish(), CWindowInterface::removeFromMainWindow(), slotQuit(), CQProgressDialog::timerShow(), and CQMessageBox::~CQMessageBox().

{
  return pMainWindow;
}

const QList< QPointer< QMainWindow > > & CopasiUI3Window::getWindows

(

)

const

Returns the list of current windows

Definition at line 1961 of file copasiui3window.cpp.

References mWindows.

Referenced by Worker::slotNotify().

{
  return mWindows;
}

void CopasiUI3Window::importSBMLFromString

(

const std::string &

sbmlDocumentText

)

This is used to import an SBML file from a std::string in the GUI it does all the necessary GUI stuff like asking to save the old document, displaying messages, etc.

Definition at line 1305 of file copasiui3window.cpp.

References DataModelGUI::commit(), ListViews::DELETE, CCopasiRootContainer::getDatamodelList(), DataModelGUI::importSBMLFromString(), SliderDialog::isChanged(), mCommitRequired, ListViews::MODEL, mpDataModelGUI, mpListView, mpSliders, DataModelGUI::notify(), CQMessageBox::question(), slotFileSave(), slotImportSBMLFromStringFinished(), and ListViews::switchToOtherWidget().

{
  if (mCommitRequired)
    {
      mpDataModelGUI->commit();
    }

  if (!sbmlDocumentText.empty())
    {
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);

      if (mpDataModelGUI && ((*CCopasiRootContainer::getDatamodelList())[0]->isChanged() || this->mpSliders->isChanged()))
        {
          switch (CQMessageBox::question(this, "COPASI",
                                         "The document contains unsaved changes\n"
                                         "Do you want to save the changes before exiting?",
                                         QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel,
                                         QMessageBox::Save))
            {
              case QMessageBox::Save:
                mCommitRequired = false;
                slotFileSave();
                break;

              case QMessageBox::Discard:
                break;

              case QMessageBox::Cancel:
              default:
                return;
                break;
            }
        }

      mpDataModelGUI->notify(ListViews::MODEL, ListViews::DELETE,
                             (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

      mpListView->switchToOtherWidget(0, "");

      if (!mpDataModelGUI)
        {
          mpDataModelGUI = new DataModelGUI(this); // create a new data model
        }

      setCursor(Qt::WaitCursor);
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotImportSBMLFromStringFinished(bool)));

      mpDataModelGUI->importSBMLFromString(sbmlDocumentText);
    }
}

bool CopasiUI3Window::isMainThread ( )

static

Definition at line 111 of file copasiui3window.cpp.

References mpMainThread, and pMainWindow.

Referenced by CProgressBar::addItem(), COutputHandlerPlot::compile(), CProgressBar::create(), CQMessageBox::critical(), CProgressBar::finish(), CProgressBar::finishItem(), CQMessageBox::information(), CProgressBar::progressItem(), CQMessageBox::question(), CProgressBar::setName(), and CQMessageBox::warning().

{
  return pMainWindow == NULL || pMainWindow->mpMainThread == QThread::currentThread();
}

void CopasiUI3Window::license ( )

protectedslot

Definition at line 1252 of file copasiui3window.cpp.

References FixedTitle, and CCopasiRootContainer::getLicenseHTML().

Referenced by createMenuBar().

{
  AboutDialog* aboutDialog = new AboutDialog(this, CCopasiRootContainer::getLicenseHTML(), 76, 30);
  aboutDialog->setWindowTitle(FixedTitle);
  aboutDialog->exec();
}

void CopasiUI3Window::listViewsFolderChanged ( const QModelIndex &  index )

protectedslot

Definition at line 1732 of file copasiui3window.cpp.

References ListViews::getCurrentItemId(), mpListView, mpSliders, refreshWindowsMenu(), and SliderDialog::setCurrentFolderId().

Referenced by CopasiUI3Window().

{
  size_t id = mpListView->getCurrentItemId();
  this->mpSliders->setCurrentFolderId(id);
  refreshWindowsMenu();
}

const bool & CopasiUI3Window::messageShown

(

)

const

Definition at line 2076 of file copasiui3window.cpp.

References mMessageShown.

{
  return mMessageShown;
}

void CopasiUI3Window::newDoc ( )

protectedslot

Definition at line 700 of file copasiui3window.cpp.

References ListViews::ADD, DataModelGUI::commit(), DataModelGUI::createModel(), ListViews::DELETE, ListViews::getCurrentWidget(), CCopasiRootContainer::getDatamodelList(), SliderDialog::isChanged(), mCommitRequired, mNewFile, ListViews::MODEL, mpaExportODE, mpaExportSBML, mpaSave, mpaSaveAs, mpDataModelGUI, mpListView, mpSliders, mSaveAsRequired, DataModelGUI::notify(), CQMessageBox::question(), SliderDialog::reset(), CQTabWidget::selectTab(), SliderDialog::setChanged(), signalLoadFile(), slotFileSave(), ListViews::switchToOtherWidget(), and updateTitle().

Referenced by createActions(), openInitialDocument(), and slotFileOpenFinished().

{
  disconnect(this, SIGNAL(signalLoadFile(QString)), this, SLOT(newDoc()));

  if (mCommitRequired)
    {
      mpDataModelGUI->commit();
    }

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);

  if (mpDataModelGUI && ((*CCopasiRootContainer::getDatamodelList())[0]->isChanged() || this->mpSliders->isChanged()))
    {
      switch (CQMessageBox::question(this, "COPASI",
                                     "The document contains unsaved changes\n"
                                     "Do you want to save the changes before exiting?",
                                     QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel,
                                     QMessageBox::Save))
        {
          case QMessageBox::Save:
            connect(this, SIGNAL(signalLoadFile(QString)), this, SLOT(newDoc()));

            mNewFile = "newDoc()";
            mCommitRequired = false;
            slotFileSave();
            return;

            break;

          case QMessageBox::Discard:
            break;

          case QMessageBox::Cancel:
          default:
            return;
            break;
        }
    }

  mpDataModelGUI->notify(ListViews::MODEL, ListViews::DELETE,
                         (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

  mpListView->switchToOtherWidget(0, "");

  // delete the old sliders
  if (this->mpSliders) this->mpSliders->reset();

  mpDataModelGUI->createModel();
  this->mpSliders->setChanged(false);
  mpDataModelGUI->notify(ListViews::MODEL, ListViews::ADD, (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());
  //if (!mbObject_browser_open)
  //mpFileMenu->setItemEnabled(nobject_browser, true);

  mpaSave->setEnabled(true);
  mpaSaveAs->setEnabled(true);
  mpaExportSBML->setEnabled(true);
  mpaExportODE->setEnabled(true);

#ifdef COPASI_SEDML
  mpaExportSEDML->setEnabled(true);
#endif

  updateTitle();
  mpListView->switchToOtherWidget(1, "");
  CQTabWidget *widget = dynamic_cast<CQTabWidget *>(mpListView->getCurrentWidget());

  if (widget != NULL)
    widget->selectTab(0);

  mSaveAsRequired = true;
  mCommitRequired = true;
}

void CopasiUI3Window::openInitialDocument ( const QString &  file )

slot

Definition at line 773 of file copasiui3window.cpp.

References COptions::compareValue(), FROM_UTF8, COptions::getNonOptions(), COptions::getValue(), newDoc(), slotFileOpen(), and slotImportSBML().

Referenced by CQCopasiApplication::setMainWindow(), and Worker::Worker().

{
  if (file != "")
    {
      slotFileOpen(file);
    }
  else if (!COptions::compareValue("ImportSBML", std::string("")))
    {
      // Import the SBML File
      std::string ImportSBML;
      COptions::getValue("ImportSBML", ImportSBML);
      slotImportSBML(FROM_UTF8(ImportSBML));
    }

#ifdef COPASI_SEDML
  else if (!COptions::compareValue("ImportSEDML", std::string("")))
    {
      // Import the SEDML File
      std::string ImportSEDML;
      COptions::getValue("ImportSEDML", ImportSEDML);
      slotImportSEDML(FROM_UTF8(ImportSEDML));
    }

#endif
  else if (COptions::getNonOptions().size())
    {
      // Look at commandline
      slotFileOpen(FROM_UTF8(COptions::getNonOptions()[0]));
    }
  else
    {
      newDoc();
    }

#ifdef COPASI_SBW_INTEGRATION
  sbwConnect();
#endif // COPASI_SBW_INTEGRATION
}

void CopasiUI3Window::refreshRecentFileMenu ( )

private

Definition at line 1866 of file copasiui3window.cpp.

References CCopasiParameterGroup::beginIndex(), C_INT, CCopasiParameterGroup::endIndex(), FROM_UTF8, CCopasiRootContainer::getConfiguration(), CCopasiParameterGroup::getGroup(), CConfigurationFile::getRecentFiles(), mpMenuRecentFiles, mpRecentFilesActionGroup, mRecentFilesActionMap, and slotOpenRecentFile().

Referenced by createMenuBar(), slotFileOpenFinished(), and slotFileSaveFinished().

{
  mpMenuRecentFiles->clear();

  mRecentFilesActionMap.clear();

  if (mpRecentFilesActionGroup != NULL)
    {
      disconnect(mpRecentFilesActionGroup, SIGNAL(triggered(QAction *)), this, SLOT(slotOpenRecentFile(QAction *)));
      mpRecentFilesActionGroup->deleteLater();
      mpRecentFilesActionGroup = NULL;
    }

  mpRecentFilesActionGroup = new QActionGroup(this);
  connect(mpRecentFilesActionGroup, SIGNAL(triggered(QAction *)), this, SLOT(slotOpenRecentFile(QAction *)));

  QAction * pAction;

  CCopasiParameterGroup::index_iterator it =
    CCopasiRootContainer::getConfiguration()->getRecentFiles().getGroup("Recent Files")->beginIndex();
  CCopasiParameterGroup::index_iterator end =
    CCopasiRootContainer::getConfiguration()->getRecentFiles().getGroup("Recent Files")->endIndex();

  C_INT Index = 0;

  for (; it != end; ++it, ++Index)
    {
      pAction = new QAction(FROM_UTF8(*(*it)->getValue().pSTRING), mpRecentFilesActionGroup);
      mpMenuRecentFiles->addAction(pAction);
      mRecentFilesActionMap[pAction] = Index;
    }
}

void CopasiUI3Window::refreshRecentSBMLFileMenu ( )

private

Definition at line 1899 of file copasiui3window.cpp.

References CCopasiParameterGroup::beginIndex(), C_INT, CCopasiParameterGroup::endIndex(), FROM_UTF8, CCopasiRootContainer::getConfiguration(), CCopasiParameterGroup::getGroup(), CConfigurationFile::getRecentSBMLFiles(), mpMenuRecentSBMLFiles, mpRecentSBMLFilesActionGroup, mRecentSBMLFilesActionMap, and slotOpenRecentSBMLFile().

Referenced by createMenuBar(), slotExportSBMLFinished(), and slotImportSBMLFinished().

{
  mpMenuRecentSBMLFiles->clear();

  mRecentSBMLFilesActionMap.clear();

  if (mpRecentSBMLFilesActionGroup != NULL)
    {
      disconnect(mpRecentSBMLFilesActionGroup, SIGNAL(triggered(QAction *)), this, SLOT(slotOpenRecentSBMLFile(QAction *)));
      mpRecentSBMLFilesActionGroup->deleteLater();
      mpRecentSBMLFilesActionGroup = NULL;
    }

  mpRecentSBMLFilesActionGroup = new QActionGroup(this);
  connect(mpRecentSBMLFilesActionGroup, SIGNAL(triggered(QAction *)), this, SLOT(slotOpenRecentSBMLFile(QAction *)));

  QAction * pAction;

  CCopasiParameterGroup::index_iterator it =
    CCopasiRootContainer::getConfiguration()->getRecentSBMLFiles().getGroup("Recent Files")->beginIndex();
  CCopasiParameterGroup::index_iterator end =
    CCopasiRootContainer::getConfiguration()->getRecentSBMLFiles().getGroup("Recent Files")->endIndex();

  C_INT Index = 0;

  for (; it != end; ++it, ++Index)
    {
      pAction = new QAction(FROM_UTF8(*(*it)->getValue().pSTRING), mpRecentSBMLFilesActionGroup);
      mpMenuRecentSBMLFiles->addAction(pAction);
      mRecentSBMLFilesActionMap[pAction] = Index;
    }
}

void CopasiUI3Window::refreshWindowsMenu ( )

private

Definition at line 1984 of file copasiui3window.cpp.

References CWindowInterface::getWindowMenu(), mpaCloseAllWindows, mpWindowsActionGroup, mpWindowsMenu, mWindows, and slotActivateWindowTriggered().

Referenced by addWindow(), createMenuBar(), listViewsFolderChanged(), removeWindow(), and slotCloseAllWindows().

{
  // (I assume a QActionGroup was used, so only one window will be activated at a time)
  if (mpWindowsActionGroup != NULL)
    {
      disconnect(mpWindowsActionGroup, SIGNAL(triggered(QAction *)), this, SLOT(slotActivateWindowTriggered(QAction *)));
      mpWindowsActionGroup->deleteLater();
      mpWindowsActionGroup = NULL;
    }

  mpWindowsActionGroup = new QActionGroup(this);
  connect(mpWindowsActionGroup, SIGNAL(triggered(QAction *)), this, SLOT(slotActivateWindowTriggered(QAction *)));

  // Re-initialize items the menus will always have
  mpWindowsMenu->clear();
  // COPASI main window
  QAction * pAction = new QAction(mWindows[0]->windowTitle(), mpWindowsActionGroup);
  mpWindowsMenu->addAction(pAction);

  if (mWindows.count() > 1)
    {
      mpWindowsMenu->addSeparator();
      mpWindowsMenu->addAction(mpaCloseAllWindows);
      mpWindowsMenu->addSeparator();
    }

  // . . . for the secondary windows, also . . .
  for (int index = 1; index < mWindows.count(); ++index)
    {
      QMainWindow* mainWindow = mWindows[index];

      if (mainWindow == NULL) continue;

      CWindowInterface* window = dynamic_cast<CWindowInterface*>(mainWindow);
      QMenu* menu = window->getWindowMenu();
      menu->clear();
      menu->addAction(pAction);
      menu->addSeparator();
      menu->addAction(mpaCloseAllWindows);
      menu->addSeparator();
    }

  // Add secondary windows to the Window menus
  for (int index = 1; index < mWindows.count(); ++index)
    {
      QMainWindow* mActionWindow = mWindows[index];

      if (mActionWindow == NULL) continue;

      pAction = new QAction(mWindows[index]->windowTitle(), mpWindowsActionGroup);
      mpWindowsMenu->addAction(pAction);

      for (int index1 = 1; index1 < mWindows.count(); ++index1)
        {
          QMainWindow* mainWindow = mWindows[index1];

          if (mainWindow == NULL) continue;

          CWindowInterface* window = dynamic_cast<CWindowInterface*>(mainWindow);
          QMenu* menu = window->getWindowMenu();
          menu->addAction(pAction);
        }
    }
}

void CopasiUI3Window::removeWindow

(

QMainWindow *

pWindow

)

Definition at line 1972 of file copasiui3window.cpp.

References mWindows, and refreshWindowsMenu().

Referenced by PlotWindow::closeEvent(), CWindowInterface::removeFromMainWindow(), and slotShowSliders().

{
  int index = mWindows.indexOf(pWindow);

  if (index == -1)
    return;

  // only delete when there is such a window
  mWindows.removeAt(index);
  refreshWindowsMenu();
}

void CopasiUI3Window::setApplicationFont ( )

private

Definition at line 2250 of file copasiui3window.cpp.

References FROM_UTF8, CConfigurationFile::getApplicationFont(), CCopasiRootContainer::getConfiguration(), CConfigurationFile::setApplicationFont(), and TO_UTF8.

Referenced by CopasiUI3Window().

{
  std::string ApplicationFont = CCopasiRootContainer::getConfiguration()->getApplicationFont();

  if (ApplicationFont == "")
    {
      return;
    }

  QFont Font = qApp->font();

  if (ApplicationFont == TO_UTF8(Font.toString()))
    {
      // We are using the default
      CCopasiRootContainer::getConfiguration()->setApplicationFont("");
      return;
    }

  // The user has chosen another font
  Font.fromString(FROM_UTF8(ApplicationFont));
  qApp->setFont(Font);

  // This appears to load the fonts, etc. from the previous configuration.
  // Two calls so that the tabwidget labels are correct
  qApp->setStyleSheet(" * {font : }");
  qApp->setStyleSheet(" * {font : }");
}

void CopasiUI3Window::setMessageShown

(

const bool &

shown

)

Definition at line 2071 of file copasiui3window.cpp.

References mMessageShown.

Referenced by CQMessageBox::CQMessageBox(), and CQMessageBox::~CQMessageBox().

{
  mMessageShown = shown;
}

void CopasiUI3Window::signalLoadFile ( QString  newFile )

signal

Referenced by newDoc(), slotFileOpen(), slotFileSaveFinished(), and slotImportSBML().

void CopasiUI3Window::signalQuit ( )

signal

Referenced by CleanUp().

void CopasiUI3Window::slotActivateWindowTriggered ( QAction *  action )

protectedslot

Definition at line 2063 of file copasiui3window.cpp.

References getWindowByTitle(), and mWindows.

Referenced by refreshWindowsMenu().

{
  QMainWindow *window  = getWindowByTitle(mWindows, action->text());

  if (window != NULL)
    window ->activateWindow();
}

void CopasiUI3Window::slotApplyInitialState ( )

protectedslot

Definition at line 2155 of file copasiui3window.cpp.

References CModel::applyInitialValues(), ListViews::CHANGE, DataModelGUI::commit(), CModel::compileIfNecessary(), CCopasiRootContainer::getDatamodelList(), mpDataModelGUI, DataModelGUI::notify(), ListViews::STATE, and CModel::updateNonSimulatedValues().

Referenced by createActions().

{
  mpDataModelGUI->commit();

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CModel *pModel = (*CCopasiRootContainer::getDatamodelList())[0]->getModel();

  if (pModel != NULL)
    {
      pModel->compileIfNecessary(NULL);
      pModel->applyInitialValues();
      pModel->updateNonSimulatedValues();

      mpDataModelGUI->notify(ListViews::STATE, ListViews::CHANGE, (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());
    }
}

void CopasiUI3Window::slotCapture ( )

protectedslot

Definition at line 2197 of file copasiui3window.cpp.

References C_INT32, checkSelection(), ListViews::getCurrentWidget(), CopasiFileDialog::getSaveFileName(), and mpListView.

Referenced by createActions().

{
  QPixmap pixmap = QPixmap::grabWidget(mpListView->getCurrentWidget());

  C_INT32 Answer = QMessageBox::No;
  QString fileName;

  while (Answer == QMessageBox::No)
    {
      fileName = CopasiFileDialog::getSaveFileName(this,
                 "Save File Dialog", "untitled.png", "PNG Files (*.png)", "Save Capture as PNG file");

      if (fileName.isEmpty()) return;

      // Checks whether the file exists
      Answer = checkSelection(fileName);

      if (Answer == QMessageBox::Cancel) return;
    }

  pixmap.save(fileName, "PNG");
}

void CopasiUI3Window::slotCheckModel ( )

protectedslot

Definition at line 2082 of file copasiui3window.cpp.

References FROM_UTF8, CCopasiRootContainer::getDatamodelList(), and CModelAnalyzer::writeReport().

Referenced by createActions().

{
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CModelAnalyzer MA((*CCopasiRootContainer::getDatamodelList())[0]->getModel());

  std::ostringstream ss;
  // MA.writeReport(ss, true, false);
  MA.writeReport(ss, true, true);

  CQCheckModelWindow * checkModelWindow = new CQCheckModelWindow(this);

  checkModelWindow->setWindowTitle("Check Model");
  checkModelWindow->textEdit->setText(FROM_UTF8(ss.str()));

  checkModelWindow->show();
}

void CopasiUI3Window::slotCloseAllWindows ( )

protectedslot

Definition at line 2049 of file copasiui3window.cpp.

References mWindows, and refreshWindowsMenu().

Referenced by createActions().

{
  // all except main window (index == 0)
  for (int index = mWindows.count() - 1; index >= 1 ; --index)
    {
      QMainWindow* window = mWindows[index];

      if (window != NULL)
        window->close();
    }

  refreshWindowsMenu();
}

void CopasiUI3Window::slotConvertToIrreversible ( )

protectedslot

Definition at line 1691 of file copasiui3window.cpp.

References ListViews::CHANGE, CCopasiMessage::clearDeque(), DataModelGUI::commit(), CModel::convert2NonReversible(), CCopasiMessage::getAllMessageText(), CCopasiRootContainer::getDatamodelList(), CQMessageBox::information(), ListViews::MODEL, mpDataModelGUI, mpListView, DataModelGUI::notify(), and ListViews::switchToOtherWidget().

Referenced by createMenuBar().

{
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CModel* model = (*CCopasiRootContainer::getDatamodelList())[0]->getModel();

  if (!model) return;

  mpDataModelGUI->commit();
  mpListView->switchToOtherWidget(114, "");

  CCopasiMessage::clearDeque();

  if (!model->convert2NonReversible())
    {
      // Display error messages.
      CQMessageBox::information(this, "Conversion Failed",
                                CCopasiMessage::getAllMessageText().c_str(),
                                QMessageBox::Ok | QMessageBox::Default,
                                QMessageBox::NoButton);
      CCopasiMessage::clearDeque();
    }

  (*CCopasiRootContainer::getDatamodelList())[0]->changed();

  mpDataModelGUI->notify(ListViews::MODEL, ListViews::CHANGE, "");
}

void CopasiUI3Window::slotExpandModel ( )

protectedslot

Definition at line 2279 of file copasiui3window.cpp.

References ListViews::CHANGE, ListViews::MODEL, mpDataModelGUI, and DataModelGUI::notify().

Referenced by createActions().

{

  CQExpandModelData *widget = new CQExpandModelData;
  widget->exec();

  mpDataModelGUI->notify(ListViews::MODEL, ListViews::CHANGE, "");
}

void CopasiUI3Window::slotExportMathModel ( )

protectedslot

Definition at line 1585 of file copasiui3window.cpp.

References CDirEntry::baseName(), C_INT32, checkSelection(), DataModelGUI::commit(), CDirEntry::dirName(), DataModelGUI::exportMathModel(), FROM_UTF8, CCopasiRootContainer::getDatamodelList(), CCopasiDataModel::getFileName(), CopasiFileDialog::getSaveFileName(), mpDataModelGUI, CDirEntry::Separator, slotExportMathModelFinished(), and TO_UTF8.

Referenced by createActions().

{
  mpDataModelGUI->commit();

  C_INT32 Answer = QMessageBox::No;
  QString tmp;
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
  assert(pDataModel != NULL);

  QString *userFilter = new QString;

  while (Answer == QMessageBox::No)
    {
      QString Default = QString::null;

      if (pDataModel->getFileName() != "")
        Default
        = FROM_UTF8(CDirEntry::dirName(pDataModel->getFileName())
                    + CDirEntry::Separator
                    + CDirEntry::baseName(pDataModel->getFileName()));
      else
        Default = "untitled.c";

      tmp =
        CopasiFileDialog::getSaveFileName(this, "Save File Dialog",
                                          Default,
                                          "C Files (*.c);;Berkeley Madonna Files (*.mmd);;XPPAUT (*.ode)",
                                          "Choose an export format", userFilter);

      if (tmp.isEmpty()) return;

#ifdef DEBUG_UI
      qDebug() << "user's filter pointer = " << *userFilter;
#endif

      // Checks whether the file exists
      Answer = checkSelection(tmp);

      if (Answer == QMessageBox::Cancel) return;
    }

  if (mpDataModelGUI && !tmp.isNull())
    {
      setCursor(Qt::WaitCursor);
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotExportMathModelFinished(bool)));
      mpDataModelGUI->exportMathModel(TO_UTF8(tmp), TO_UTF8(*userFilter), true);
    }
}

void CopasiUI3Window::slotExportMathModelFinished ( bool  success )

protectedslot

Definition at line 1635 of file copasiui3window.cpp.

References CCopasiMessage::clearDeque(), CQMessageBox::critical(), CCopasiMessage::getAllMessageText(), MCCopasiMessage, mpDataModelGUI, and CCopasiMessage::peekLastMessage().

Referenced by slotExportMathModel().

{
  unsetCursor();
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotExportMathModelFinished(bool)));

  if (!success &&
      CCopasiMessage::peekLastMessage().getNumber() != MCCopasiMessage + 1)
    {
      CQMessageBox::critical(this, "Export Error",
                             CCopasiMessage::getAllMessageText().c_str(),
                             QMessageBox::Ok | QMessageBox::Default,
                             QMessageBox::NoButton);
      CCopasiMessage::clearDeque();
    }
}

void CopasiUI3Window::slotExportSBML ( )

protectedslot

Definition at line 1516 of file copasiui3window.cpp.

References CDirEntry::baseName(), C_INT32, checkSelection(), DataModelGUI::commit(), CDirEntry::dirName(), DataModelGUI::exportSBML(), FROM_UTF8, CCopasiRootContainer::getDatamodelList(), CQSBMLFileDialog::getSaveFileName(), mpDataModelGUI, CDirEntry::Separator, slotExportSBMLFinished(), and TO_UTF8.

Referenced by createActions().

{
  mpDataModelGUI->commit();

  C_INT32 Answer = QMessageBox::No;
  QString tmp;
  bool exportIncomplete = false;
  int sbmlLevel = 2;
  int sbmlVersion = 4;

  while (Answer == QMessageBox::No)
    {
      QString Default = QString::null;
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);

      if ((*CCopasiRootContainer::getDatamodelList())[0]->getFileName() != "")
        Default
        = FROM_UTF8(CDirEntry::dirName((*CCopasiRootContainer::getDatamodelList())[0]->getFileName())
                    + CDirEntry::Separator
                    + CDirEntry::baseName((*CCopasiRootContainer::getDatamodelList())[0]->getFileName())
                    + ".xml");
      else
        {
          Default = "untitled.xml";
        }

      // if there already is an SBML model, we present the user with the Level
      // and Version of that document as the selected Level and Version to
      // export to.
      if ((*CCopasiRootContainer::getDatamodelList())[0]->getCurrentSBMLDocument() != NULL)
        {
          sbmlLevel = (*CCopasiRootContainer::getDatamodelList())[0]->getCurrentSBMLDocument()->getLevel();
          sbmlVersion = (*CCopasiRootContainer::getDatamodelList())[0]->getCurrentSBMLDocument()->getVersion();
        }

      std::pair<QString, std::pair<unsigned C_INT32, unsigned C_INT32> > nameAndVersion =
        CQSBMLFileDialog::getSaveFileName(this, "Export SBML Dialog", Default,
                                          "Choose a filename and SBML version for SBML export.",
                                          sbmlLevel,
                                          sbmlVersion);
      tmp = nameAndVersion.first;
      sbmlLevel = nameAndVersion.second.first;
      sbmlVersion = nameAndVersion.second.second;

      if (tmp.isEmpty()) return;

      // Checks whether the file exists
      Answer = checkSelection(tmp);

      if (Answer == QMessageBox::Cancel) return;
    }

  if (mpDataModelGUI && !tmp.isNull())
    {
      setCursor(Qt::WaitCursor);
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotExportSBMLFinished(bool)));
      mpDataModelGUI->exportSBML(TO_UTF8(tmp), true, sbmlLevel, sbmlVersion, exportIncomplete);
    }
}

void CopasiUI3Window::slotExportSBMLFinished ( bool  success )

protectedslot

Definition at line 1576 of file copasiui3window.cpp.

References checkPendingMessages(), mpDataModelGUI, and refreshRecentSBMLFileMenu().

Referenced by slotExportSBML().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotExportSBMLFinished(bool)));
  unsetCursor();

  checkPendingMessages();
  refreshRecentSBMLFileMenu();
}

void CopasiUI3Window::slotExportSBMLToStringFinished ( bool  success )

protectedslot

Definition at line 1945 of file copasiui3window.cpp.

References CCopasiMessage::clearDeque(), CQMessageBox::critical(), FROM_UTF8, CCopasiMessage::getLastMessage(), and mpDataModelGUI.

Referenced by exportSBMLToString().

{
  unsetCursor();
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotExportSBMLToStringFinished(bool)));

  if (!success)
    {
      QString Message = "Error while exporting SBML model!\n\n";
      Message += FROM_UTF8(CCopasiMessage::getLastMessage().getText());

      CQMessageBox::critical(this, QString("File Error"), Message,
                             QMessageBox::Ok, QMessageBox::Ok);
      CCopasiMessage::clearDeque();
    }
}

void CopasiUI3Window::slotFileExamplesCopasiFiles ( QString  file = QString::null )

protectedslot

Definition at line 994 of file copasiui3window.cpp.

References CopasiFileDialog::openExampleDir(), and slotFileOpen().

Referenced by createActions().

{
  CopasiFileDialog::openExampleDir(); //Sets CopasiFileDialog::LastDir
  slotFileOpen(file);
}

void CopasiUI3Window::slotFileExamplesSBMLFiles ( QString  file = QString::null )

protectedslot

Definition at line 1000 of file copasiui3window.cpp.

References CopasiFileDialog::openExampleDir(), and slotImportSBML().

Referenced by createActions().

{
  CopasiFileDialog::openExampleDir(); //Sets CopasiFileDialog::LastDir
  slotImportSBML(file);
}

void CopasiUI3Window::slotFileOpen ( QString  file = QString::null )

slot

Definition at line 812 of file copasiui3window.cpp.

References CCopasiMessage::clearDeque(), DataModelGUI::commit(), ListViews::DELETE, CCopasiRootContainer::getDatamodelList(), CopasiFileDialog::getOpenFileName(), SliderDialog::isChanged(), DataModelGUI::loadModel(), mCommitRequired, mNewFile, ListViews::MODEL, mpDataModelGUI, mpListView, mpSliders, DataModelGUI::notify(), CQMessageBox::question(), SliderDialog::reset(), signalLoadFile(), slotFileOpenFinished(), slotFileSave(), ListViews::switchToOtherWidget(), and TO_UTF8.

Referenced by createActions(), dropEvent(), CQCopasiApplication::event(), openInitialDocument(), slotFileExamplesCopasiFiles(), and slotOpenRecentFile().

{
  disconnect(this, SIGNAL(signalLoadFile(QString)), this, SLOT(slotFileOpen(QString)));

  if (mCommitRequired)
    {
      mpDataModelGUI->commit();
    }

  QString newFile = "";

  if (file == "")
    newFile =
      CopasiFileDialog::getOpenFileName(this, "Open File Dialog", QString::null,
                                        "COPASI Files (*.gps *.cps);;All Files (*)",
                                        "Choose a file");
  else
    newFile = file;

  // gives the file information to the datamodel to handle it

  if (!newFile.isNull())
    {
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);

      if (mpDataModelGUI && ((*CCopasiRootContainer::getDatamodelList())[0]->isChanged() || this->mpSliders->isChanged()))
        {
          switch (CQMessageBox::question(this, "COPASI",
                                         "The document contains unsaved changes\n"
                                         "Do you want to save the changes before exiting?",
                                         QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel,
                                         QMessageBox::Save))
            {
              case QMessageBox::Save:
                connect(this, SIGNAL(signalLoadFile(QString)), this, SLOT(slotFileOpen(QString)));

                mNewFile = newFile;
                mCommitRequired = false;
                slotFileSave();
                return;

                break;

              case QMessageBox::Discard:
                break;

              case QMessageBox::Cancel:
              default:
                return;
                break;
            }
        }

      mpDataModelGUI->notify(ListViews::MODEL, ListViews::DELETE,
                             (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

      mpListView->switchToOtherWidget(0, "");

      if (this->mpSliders) this->mpSliders->reset();

      this->setCursor(Qt::WaitCursor);

      CCopasiMessage::clearDeque();

      mNewFile = newFile;
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotFileOpenFinished(bool)));
      mpDataModelGUI->loadModel(TO_UTF8(newFile));
    }
}

void CopasiUI3Window::slotFileOpenFinished ( bool  success )

protectedslot

Definition at line 882 of file copasiui3window.cpp.

References ListViews::ADD, DataModelGUI::createModel(), CQMessageBox::critical(), FROM_UTF8, CCopasiMessage::getAllMessageText(), ListViews::getCurrentWidget(), CCopasiRootContainer::getDatamodelList(), CCopasiMessage::getLastMessage(), CCopasiMessage::getNumber(), CCopasiMessage::getText(), CDirEntry::isWritable(), MCCopasiMessage, mCommitRequired, mNewFile, ListViews::MODEL, mpaExportODE, mpaExportSBML, mpaSave, mpaSaveAs, mpDataModelGUI, mpListView, mSaveAsRequired, newDoc(), DataModelGUI::notify(), CQMessageBox::question(), refreshRecentFileMenu(), CQTabWidget::selectTab(), slotImportSBML(), CDirEntry::suffix(), ListViews::switchToOtherWidget(), TO_UTF8, updateTitle(), and CQMessageBox::warning().

Referenced by slotFileOpen().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotFileOpenFinished(bool)));
  unsetCursor();
  mCommitRequired = true;

  if (!success)
    {
      QString Message = "Error while loading file " + mNewFile + QString("!\n\n");
      Message += FROM_UTF8(CCopasiMessage::getAllMessageText(true));

      CQMessageBox::critical(this, QString("File Error"), Message,
                             QMessageBox::Ok, QMessageBox::Ok);
      mpDataModelGUI->createModel();
    }

  CCopasiMessage msg = CCopasiMessage::getLastMessage();

  if (msg.getNumber() == 6303 &&
      (msg.getText().find("'sbml'") != std::string::npos || msg.getText().find(":sbml'") != std::string::npos))
    {

      // someone attempted to open an SBML file but failed, instead of displaying the message
      //   XML (3): Unknown element 'sbml' encountered at line '3'.
      // we just open the SBML file!
      if (CQMessageBox::question(this, QString("Import SBML?"), QString("You tried to open an SBML file. COPASI is not able to open SBML files but is able to import it. Would you like to import it?"),
                                 QMessageBox::Yes | QMessageBox::No, QMessageBox::Yes) == QMessageBox::Yes)
        {
          emit slotImportSBML(mNewFile);
          return;
        }

      newDoc();
      return;
    }

#ifdef COPASI_SEDML

  if (msg.getNumber() == 6303 &&
      (msg.getText().find("'sedML'") != std::string::npos || msg.getText().find(":sedML'") != std::string::npos))
    {

      // someone attempted to open an SEDML file but failed, instead of displaying the message
      //   XML (3): Unknown element 'sedml' encountered at line '3'.
      // we just open the SEDML file!
      if (CQMessageBox::question(this, QString("Import SED-ML?"), QString("You tried to open an SED-ML file. COPASI is not able to open SED-ML files but is able to import it. Would you like to import it?"),
                                 QMessageBox::Yes | QMessageBox::No, QMessageBox::Yes) == QMessageBox::Yes)
        {
          emit slotImportSEDML(mNewFile);
          return;
        }

      newDoc();
      return;
    }

#endif

  if (msg.getNumber() != MCCopasiMessage + 1)
    {
      QString Message = "Problem while loading file " + mNewFile + QString("!\n\n");
      Message += FROM_UTF8(msg.getText());

      msg = CCopasiMessage::getLastMessage();

      while (msg.getNumber() != MCCopasiMessage + 1)
        {
          Message += "\n";
          Message += FROM_UTF8(msg.getText());
          msg = CCopasiMessage::getLastMessage();
        }

      CQMessageBox::warning(this, QString("File Warning"), Message,
                            QMessageBox::Ok, QMessageBox::Ok);
    }

  if (strcasecmp(CDirEntry::suffix(TO_UTF8(mNewFile)).c_str(), ".cps") == 0 &&
      CDirEntry::isWritable(TO_UTF8(mNewFile)))
    mSaveAsRequired = false;
  else
    mSaveAsRequired = true;

  if (!(*CCopasiRootContainer::getDatamodelList())[0]->getModel())
    {
      newDoc();
      mSaveAsRequired = true;
    }

  mpDataModelGUI->notify(ListViews::MODEL, ListViews::ADD,
                         (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

  mpaSave->setEnabled(true);
  mpaSaveAs->setEnabled(true);
  mpaExportSBML->setEnabled(true);
  mpaExportODE->setEnabled(true);

#ifdef COPASI_SEDML
  mpaExportSEDML->setEnabled(true);
#endif

  updateTitle();
  mpListView->switchToOtherWidget(1, "");
  CQTabWidget *widget = dynamic_cast<CQTabWidget *>(mpListView->getCurrentWidget());

  if (widget != NULL)
    widget->selectTab(0);

  refreshRecentFileMenu();

  mNewFile = "";
}

void CopasiUI3Window::slotFilePrint ( )

protectedslot

Definition at line 1237 of file copasiui3window.cpp.

{}

void CopasiUI3Window::slotFileSave ( )

protectedslot

Definition at line 1098 of file copasiui3window.cpp.

References DataModelGUI::commit(), FROM_UTF8, CLocaleString::fromUtf8(), CCopasiRootContainer::getDatamodelList(), mpDataModelGUI, mSaveAsRequired, DataModelGUI::saveModel(), CQMessageBox::setText(), slotFileSaveAs(), and slotFileSaveFinished().

Referenced by createActions(), importSBMLFromString(), newDoc(), slotFileOpen(), slotImportSBML(), and slotQuit().

{
  //  mpDataModelGUI->commit(); --> remove to the line after checking the following condition (07.04.08)

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  std::string FileName = (*CCopasiRootContainer::getDatamodelList())[0]->getFileName();

  if (mSaveAsRequired || FileName == "")
    {
      return slotFileSaveAs(FROM_UTF8(FileName));
    }

  mpDataModelGUI->commit();

  std::ifstream File(CLocaleString::fromUtf8(FileName).c_str());
  std::string Line;
  File >> Line;
  File.close();

  if (!Line.compare(0, 8, "Version=") ||
      strcasecmp(FileName.c_str(), ".gps") == 0)
    {
      /* Ask for permission to overwrite write? */
      /* If no call slotFileSaveAs */
      CQMessageBox MessageBox(QMessageBox::Question,
                              "Confirm File Version Update",
                              "You are to overwrite an existing Gepasi File.\n"
                              "This will render the file unreadable for Gepasi",
                              QMessageBox::Save | QMessageBox::Ok | QMessageBox::Cancel, this);

      MessageBox.setDefaultButton(QMessageBox::Save);
      MessageBox.button(QMessageBox::Save)->setText("Save As");
      MessageBox.button(QMessageBox::Save)->setText("Overwrite");

      int choice = MessageBox.exec();

      switch (choice)
        {
          case QMessageBox::Save:
            return slotFileSaveAs(FROM_UTF8(FileName));
            break;

          case QMessageBox::Ok:
            break;

          case QMessageBox::Cancel:
            return;
            break;
        }
    }

  if (mpDataModelGUI)
    {
      setCursor(Qt::WaitCursor);

      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotFileSaveFinished(bool)));
      mpDataModelGUI->saveModel(FileName, true);
    }
}

void CopasiUI3Window::slotFileSaveAs ( QString  str = QString::null )

protectedslot

Definition at line 604 of file copasiui3window.cpp.

References C_INT32, checkSelection(), DataModelGUI::commit(), CopasiFileDialog::getSaveFileName(), mpDataModelGUI, DataModelGUI::saveModel(), slotFileSaveFinished(), and TO_UTF8.

Referenced by createActions(), and slotFileSave().

{
  mpDataModelGUI->commit();

  C_INT32 Answer = QMessageBox::No;
  QString tmp;

  if (str.isEmpty()) str = "untitled.cps";

#ifdef DEBUG_UI
  qDebug() << "Filename on slotFileSaveAs = " << str;
#endif

  while (Answer == QMessageBox::No)
    {
      tmp =
        CopasiFileDialog::getSaveFileName(this, "Save File Dialog",
                                          str, "COPASI Files (*.cps)",
                                          "Choose a filename to save under");

      if (tmp.isEmpty()) return;

#ifdef DEBUG_UI
      qDebug() << "tmp = " << tmp;
#endif

      // Checks whether the file exists
      Answer = checkSelection(tmp);

      if (Answer == QMessageBox::Cancel) return;
    }

  if (mpDataModelGUI && !tmp.isNull())
    {
      setCursor(Qt::WaitCursor);

      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotFileSaveFinished(bool)));
      mpDataModelGUI->saveModel(TO_UTF8(tmp), true);
    }
}

void CopasiUI3Window::slotFileSaveFinished ( bool  success )

protectedslot

Definition at line 645 of file copasiui3window.cpp.

References CCopasiMessage::clearDeque(), CQMessageBox::critical(), FROM_UTF8, CCopasiMessage::getAllMessageText(), CCopasiRootContainer::getDatamodelList(), CCopasiMessage::getLastMessage(), CCopasiMessage::getNumber(), CCopasiMessage::getText(), MCCopasiMessage, mNewFile, mpDataModelGUI, mpSliders, mSaveAsRequired, CCopasiMessage::peekLastMessage(), refreshRecentFileMenu(), SliderDialog::setChanged(), signalLoadFile(), updateTitle(), and CQMessageBox::warning().

Referenced by slotFileSave(), slotFileSaveAs(), and slotUpdateMIRIAMFinished().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotFileSaveFinished(bool)));

  if (success)
    {
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
      (*CCopasiRootContainer::getDatamodelList())[0]->changed(false);
      this->mpSliders->setChanged(false);
      updateTitle();

      CCopasiMessage msg = CCopasiMessage::getLastMessage();

      if (msg.getNumber() != MCCopasiMessage + 1)
        {
          QString Message("Problem while saving file!\n\n");
          Message += FROM_UTF8(msg.getText());

          msg = CCopasiMessage::getLastMessage();

          while (msg.getNumber() != MCCopasiMessage + 1)
            {
              Message += "\n";
              Message += FROM_UTF8(msg.getText());
              msg = CCopasiMessage::getLastMessage();
            }

          CQMessageBox::warning(this, QString("File Warning"), Message,
                                QMessageBox::Ok, QMessageBox::Ok);
        }
    }
  else
    {
      if (CCopasiMessage::peekLastMessage().getNumber() != MCCopasiMessage + 1)
        {
          CQMessageBox::critical(this, "Save File Error",
                                 CCopasiMessage::getAllMessageText().c_str(),
                                 QMessageBox::Ok | QMessageBox::Default,
                                 QMessageBox::NoButton);
          CCopasiMessage::clearDeque();
        }
    }

  unsetCursor();
  refreshRecentFileMenu();

  mSaveAsRequired = false;

  if (mNewFile != "")
    {
      emit signalLoadFile(mNewFile);
      mNewFile = "";
    }
}

void CopasiUI3Window::slotFontSelection ( )

protectedslot

Definition at line 2220 of file copasiui3window.cpp.

References TaskWidget::adjustTable(), CCopasiRootContainer::getConfiguration(), ListViews::getCurrentWidget(), getFont(), mpListView, CConfigurationFile::setApplicationFont(), and TO_UTF8.

Referenced by createActions().

{
  bool ok;

  QFont Font = QFontDialog::getFont(&ok, qApp->font(), this);

  if (ok)
    {
      qApp->setFont(Font);

      // The stylesheet (set in CQCopasiApplication.cpp) is apparently overriding
      // in newer versions of Qt
      // This appears to reload the font from setFont into the style.
      // Two calls so that the tabwidget labels are correct
      qApp->setStyleSheet(" * {font : }");
      qApp->setStyleSheet(" * {font : }");

      CCopasiRootContainer::getConfiguration()->setApplicationFont(TO_UTF8(Font.toString()));

      TaskWidget *pTaskWidget = dynamic_cast< TaskWidget * >(mpListView->getCurrentWidget());

      if (pTaskWidget != NULL)
        {
          pTaskWidget->adjustTable();
        }
    }

  return;
}

void CopasiUI3Window::slotFrameworkChanged ( int  index )

protectedslot

Definition at line 2189 of file copasiui3window.cpp.

References DataModelGUI::commit(), mpDataModelGUI, mpSliders, SliderDialog::setFramework(), and DataModelGUI::setFramework().

Referenced by createToolBar().

{
  mpDataModelGUI->commit();

  mpDataModelGUI->setFramework(index);
  mpSliders->setFramework(index);
}

void CopasiUI3Window::slotFunctionDBLoad ( QString  str = QString::null )

protectedslot

Definition at line 436 of file copasiui3window.cpp.

References DataModelGUI::commit(), CopasiFileDialog::getOpenFileName(), DataModelGUI::loadFunctionDB(), mCommitRequired, mpDataModelGUI, and TO_UTF8.

Referenced by createActions().

{
  if (mCommitRequired)
    {
      mpDataModelGUI->commit();
    }

  if (dbFile.isEmpty())
    {
      dbFile =
        CopasiFileDialog::getOpenFileName(this, "Open File Dialog",
                                          QString::null, "COPASI Function DB (*.cpk)",
                                          "Choose a file");
    }

  if (!dbFile.isEmpty())
    {
      mpDataModelGUI->loadFunctionDB(TO_UTF8(dbFile));
    }
}

void CopasiUI3Window::slotFunctionDBSave ( QString  str = QString::null )

protectedslot

Definition at line 406 of file copasiui3window.cpp.

References C_INT32, checkSelection(), DataModelGUI::commit(), CopasiFileDialog::getSaveFileName(), mCommitRequired, mpDataModelGUI, DataModelGUI::saveFunctionDB(), and TO_UTF8.

Referenced by createActions().

{
  if (mCommitRequired)
    {
      mpDataModelGUI->commit();
    }

  if (dbFile.isEmpty())
    {
      C_INT32 Answer = QMessageBox::No;

      while (Answer == QMessageBox::No)
        {
          dbFile =
            CopasiFileDialog::getSaveFileName(this, "Save File Dialog",
                                              "untitled.cpk", "COPASI Function DB (*.cpk)",
                                              "Choose a file");

          if (dbFile.isEmpty()) return;

          // Checks whether the file exists
          Answer = checkSelection(dbFile);

          if (Answer == QMessageBox::Cancel) return;
        }
    }

  mpDataModelGUI->saveFunctionDB(TO_UTF8(dbFile));
}

void CopasiUI3Window::slotImportSBML ( QString  file = QString::null )

protectedslot

Definition at line 1402 of file copasiui3window.cpp.

References DataModelGUI::commit(), ListViews::DELETE, CCopasiRootContainer::getDatamodelList(), CopasiFileDialog::getOpenFileName(), DataModelGUI::importSBML(), SliderDialog::isChanged(), mCommitRequired, mNewFile, ListViews::MODEL, mpDataModelGUI, mpListView, mpSliders, DataModelGUI::notify(), CQMessageBox::question(), SliderDialog::reset(), signalLoadFile(), slotFileSave(), slotImportSBMLFinished(), ListViews::switchToOtherWidget(), and TO_UTF8.

Referenced by createActions(), dropEvent(), openInitialDocument(), slotFileExamplesSBMLFiles(), slotFileOpenFinished(), and slotOpenRecentSBMLFile().

{
  disconnect(this, SIGNAL(signalLoadFile(QString)), this, SLOT(slotImportSBML(QString)));

  if (mCommitRequired)
    {
      mpDataModelGUI->commit();
    }

  QString SBMLFile;

  if (file == "")
    SBMLFile =
      CopasiFileDialog::getOpenFileName(this, "Open File Dialog",
                                        QString::null, "XML Files (*.xml);;All Files (*)",
                                        "Choose a file");
  else
    SBMLFile = file;

  if (!SBMLFile.isNull())
    {
      assert(CCopasiRootContainer::getDatamodelList()->size() > 0);

      if (mpDataModelGUI && ((*CCopasiRootContainer::getDatamodelList())[0]->isChanged() || this->mpSliders->isChanged()))
        {
          switch (CQMessageBox::question(this, "COPASI",
                                         "The document contains unsaved changes\n"
                                         "Do you want to save the changes before exiting?",
                                         QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel,
                                         QMessageBox::Save))
            {
              case QMessageBox::Save:
                connect(this, SIGNAL(signalLoadFile(QString)), this, SLOT(slotImportSBML(QString)));

                mNewFile = SBMLFile;
                mCommitRequired = false;

                slotFileSave();
                return;
                break;

              case QMessageBox::Discard:
                break;

              case QMessageBox::Cancel:
              default:
                return;
                break;
            }
        }

      mpDataModelGUI->notify(ListViews::MODEL, ListViews::DELETE,
                             (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

      mpListView->switchToOtherWidget(0, "");

      if (this->mpSliders) this->mpSliders->reset();

      if (!mpDataModelGUI)
        {
          mpDataModelGUI = new DataModelGUI(this); // create a new data model
        }

      setCursor(Qt::WaitCursor);
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotImportSBMLFinished(bool)));

      mNewFile = SBMLFile;
      mpDataModelGUI->importSBML(TO_UTF8(SBMLFile));
    }
}

void CopasiUI3Window::slotImportSBMLFinished ( bool  success )

protectedslot

Definition at line 1473 of file copasiui3window.cpp.

References ListViews::ADD, checkPendingMessages(), DataModelGUI::createModel(), CQMessageBox::critical(), FROM_UTF8, ListViews::getCurrentWidget(), CCopasiRootContainer::getDatamodelList(), CCopasiMessage::getLastMessage(), mCommitRequired, mNewFile, ListViews::MODEL, mpaExportODE, mpaExportSBML, mpaSave, mpaSaveAs, mpDataModelGUI, mpListView, mSaveAsRequired, DataModelGUI::notify(), refreshRecentSBMLFileMenu(), CQTabWidget::selectTab(), ListViews::switchToOtherWidget(), and updateTitle().

Referenced by slotImportSBML().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotImportSBMLFinished(bool)));
  unsetCursor();
  mCommitRequired = true;

  if (!success)
    {
      QString Message = "Error while loading file " + mNewFile + QString("!\n\n");
      Message += FROM_UTF8(CCopasiMessage::getLastMessage().getText());

      CQMessageBox::critical(this, QString("File Error"), Message,
                             QMessageBox::Ok, QMessageBox::Ok);

      mpDataModelGUI->createModel();
    }
  else
    // We check in all case for warnings. This will help also for unsuccessful imports
    this->checkPendingMessages();

  mpDataModelGUI->notify(ListViews::MODEL, ListViews::ADD,
                         (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

  mpaSave->setEnabled(true);
  mpaSaveAs->setEnabled(true);
  mpaExportSBML->setEnabled(true);
  mpaExportODE->setEnabled(true);

  mpListView->switchToOtherWidget(1, "");
  CQTabWidget *widget = dynamic_cast<CQTabWidget *>(mpListView->getCurrentWidget());

  if (widget != NULL)
    widget->selectTab(0);

  refreshRecentSBMLFileMenu();

  updateTitle();

  mSaveAsRequired = true;

  mNewFile = "";
}

void CopasiUI3Window::slotImportSBMLFromStringFinished ( bool  success )

protectedslot

Definition at line 1356 of file copasiui3window.cpp.

References ListViews::ADD, checkPendingMessages(), CCopasiMessage::clearDeque(), DataModelGUI::createModel(), CQMessageBox::critical(), FROM_UTF8, ListViews::getCurrentWidget(), CCopasiRootContainer::getDatamodelList(), CCopasiMessage::getLastMessage(), mCommitRequired, ListViews::MODEL, mpDataModelGUI, mpListView, mSaveAsRequired, DataModelGUI::notify(), CQTabWidget::selectTab(), ListViews::switchToOtherWidget(), and updateTitle().

Referenced by importSBMLFromString().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotImportSBMLFromStringFinished(bool)));
  unsetCursor();
  mCommitRequired = true;

  if (!success)
    {
      QString Message = "Error while importing SBML model!\n\n";
      Message += FROM_UTF8(CCopasiMessage::getLastMessage().getText());

      CQMessageBox::critical(this, QString("Import Error"), Message,
                             QMessageBox::Ok, QMessageBox::Ok);
      CCopasiMessage::clearDeque();

      mpDataModelGUI->createModel();
    }

  /* still check for warnings.
   * Maybe events or rules were ignored while reading
   * the file.
   */
  if (success)
    {
      this->checkPendingMessages();
    }

  mpDataModelGUI->notify(ListViews::MODEL, ListViews::ADD,
                         (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());

  //if (!bobject_browser_open)
  //       mpFileMenu->setItemEnabled(nsaveas_menu_id, true);
  //       msave_button->setEnabled(true);
  //       mpFileMenu->setItemEnabled(nsave_menu_id, true);

  mpListView->switchToOtherWidget(1, "");
  CQTabWidget *widget = dynamic_cast<CQTabWidget *>(mpListView->getCurrentWidget());

  if (widget != NULL)
    widget->selectTab(0);

  updateTitle();

  mSaveAsRequired = true;
}

void CopasiUI3Window::slotObjectBrowserDialogWasClosed ( )

slot

This should only be called by the destructor of the object browser dialog otherwise a memory leak occurs

Definition at line 1284 of file copasiui3window.cpp.

References mpaObjectBrowser, and mpObjectBrowser.

Referenced by slotShowObjectBrowserDialog().

{
  mpObjectBrowser = NULL;
  mpaObjectBrowser->setChecked(false);
}

void CopasiUI3Window::slotOpenRecentFile ( QAction *  pAction )

protectedslot

Definition at line 1846 of file copasiui3window.cpp.

References FROM_UTF8, CCopasiRootContainer::getConfiguration(), CCopasiParameterGroup::getGroup(), CConfigurationFile::getRecentFiles(), CCopasiParameterGroup::getValue(), mRecentFilesActionMap, CCopasiParameter::Value::pSTRING, and slotFileOpen().

Referenced by refreshRecentFileMenu().

{
  int index = mRecentFilesActionMap[pAction];

  std::string FileName =
    *CCopasiRootContainer::getConfiguration()->getRecentFiles().getGroup("Recent Files")->getValue(index).pSTRING;

  slotFileOpen(FROM_UTF8(FileName));
}

void CopasiUI3Window::slotOpenRecentSBMLFile ( QAction *  pAction )

protectedslot

Definition at line 1856 of file copasiui3window.cpp.

References FROM_UTF8, CCopasiRootContainer::getConfiguration(), CCopasiParameterGroup::getGroup(), CConfigurationFile::getRecentSBMLFiles(), CCopasiParameterGroup::getValue(), mRecentSBMLFilesActionMap, CCopasiParameter::Value::pSTRING, and slotImportSBML().

Referenced by refreshRecentSBMLFileMenu().

{
  int index = mRecentSBMLFilesActionMap[pAction];

  std::string FileName =
    *CCopasiRootContainer::getConfiguration()->getRecentSBMLFiles().getGroup("Recent Files")->getValue(index).pSTRING;

  slotImportSBML(FROM_UTF8(FileName));
}

void CopasiUI3Window::slotPreferences ( )

protectedslot

Definition at line 1290 of file copasiui3window.cpp.

Referenced by createMenuBar().

{
  CQPreferenceDialog * preferenceDialog = new CQPreferenceDialog(this, 0, false);
  preferenceDialog->setAttribute(Qt::WA_DeleteOnClose);
  preferenceDialog->setModal(true);
  preferenceDialog->show();
}

void CopasiUI3Window::slotQuit ( )

protectedslot

Definition at line 1158 of file copasiui3window.cpp.

References DataModelGUI::commit(), CCopasiRootContainer::getDatamodelList(), getMainWindow(), CQMessageBox::information(), SliderDialog::isChanged(), mpDataModelGUI, mpSliders, mQuitApplication, CQMessageBox::question(), slotFileSave(), and slotQuitFinished().

Referenced by closeEvent(), and createActions().

{
  if (!CopasiUI3Window::getMainWindow()->isEnabled())
    {
      CQMessageBox::information(this, "COPASI", "COPASI is currently executing tasks.\n"
                                "Please stop them first before closing COPASI.");
      return;
    }

  mQuitApplication = true;

  mpDataModelGUI->commit();

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);

  if (mpDataModelGUI && ((*CCopasiRootContainer::getDatamodelList())[0]->isChanged() || this->mpSliders->isChanged()))
    {
      connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotQuitFinished(bool)));

      switch (CQMessageBox::question(this, "COPASI",
                                     "The document contains unsaved changes\n"
                                     "Do you want to save the changes before exiting?",
                                     QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel,
                                     QMessageBox::Save))
        {
          case QMessageBox::Save:
            slotFileSave();
            break;

          case QMessageBox::Discard:
            slotQuitFinished(true);
            break;

          case QMessageBox::Cancel:
          default:
            slotQuitFinished(false);
            break;
        }
    }
  else
    {
      slotQuitFinished(true);
    }
}

void CopasiUI3Window::slotQuitFinished ( bool  success )

protectedslot

Definition at line 1203 of file copasiui3window.cpp.

References CleanUp(), mpDataModelGUI, and mQuitApplication.

Referenced by slotQuit().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotQuitFinished(bool)));

  mQuitApplication &= success;

  if (mQuitApplication)
    {
      CleanUp();
      qApp->quit();
    }
}

void CopasiUI3Window::slotShowObjectBrowserDialog ( bool  flag )

protectedslot

This should only be called via signal by the corresponding QAction mpaObjectBrowser. Otherwise the QAction will not be up to date.

Definition at line 1264 of file copasiui3window.cpp.

References mpObjectBrowser, and slotObjectBrowserDialogWasClosed().

Referenced by createActions().

{

  if (flag /*tools->isItemEnabled(2)*/)
    {
      if (mpObjectBrowser)
        delete mpObjectBrowser;

      mpObjectBrowser = new ObjectBrowserDialog(this, 0, false, 1);
      connect(mpObjectBrowser, SIGNAL(destroyed(QObject *)), this, SLOT(slotObjectBrowserDialogWasClosed()));

      mpObjectBrowser->show();
    }
  else
    {
      if (mpObjectBrowser)
        mpObjectBrowser->hide();
    }
}

void CopasiUI3Window::slotShowSliders ( bool  flag )

slot

Definition at line 1718 of file copasiui3window.cpp.

References addWindow(), mpaSliders, mpSliders, and removeWindow().

Referenced by SliderDialog::closeEvent(), and createActions().

{
  mpaSliders->setChecked(flag);
  this->mpSliders->setHidden(!flag);

  if (flag)
    addWindow(this->mpSliders);
  else
    removeWindow(this->mpSliders);
}

void CopasiUI3Window::slotTutorialWizard ( )

protectedslot

Definition at line 1298 of file copasiui3window.cpp.

References WizardDialog::setCopasiMainWindow().

Referenced by createMenuBar().

{
  WizardDialog* tutorialWizard = new WizardDialog();
  tutorialWizard->setCopasiMainWindow(this);
  tutorialWizard->show();
}

void CopasiUI3Window::slotUpdateInitialState ( )

protectedslot

Definition at line 2172 of file copasiui3window.cpp.

References ListViews::CHANGE, DataModelGUI::commit(), CModel::compileIfNecessary(), CCopasiRootContainer::getDatamodelList(), CModel::getState(), mpDataModelGUI, DataModelGUI::notify(), CModel::setInitialState(), ListViews::STATE, and CModel::updateInitialValues().

Referenced by createActions().

{
  mpDataModelGUI->commit();

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CModel *pModel = (*CCopasiRootContainer::getDatamodelList())[0]->getModel();

  if (pModel != NULL)
    {
      pModel->compileIfNecessary(NULL);
      pModel->setInitialState(pModel->getState());
      pModel->updateInitialValues();

      mpDataModelGUI->notify(ListViews::STATE, ListViews::CHANGE, (*CCopasiRootContainer::getDatamodelList())[0]->getModel()->getKey());
    }
}

void CopasiUI3Window::slotUpdateMIRIAM ( )

protectedslot

Definition at line 2133 of file copasiui3window.cpp.

References CCopasiMessage::clearDeque(), CCopasiRootContainer::getConfiguration(), mpDataModelGUI, slotUpdateMIRIAMFinished(), and DataModelGUI::updateMIRIAM().

Referenced by createActions().

{
  bool success = true;

  CCopasiMessage::clearDeque();

  if (!mpDataModelGUI)
    mpDataModelGUI = new DataModelGUI(this); // create a new data model

  connect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotUpdateMIRIAMFinished(bool)));

  try
    {
      success = mpDataModelGUI->updateMIRIAM(
                  CCopasiRootContainer::getConfiguration()->getRecentMIRIAMResources());
    }
  catch (...)
    {
      success = false;
    }
}

void CopasiUI3Window::slotUpdateMIRIAMFinished ( bool  success )

protectedslot

Definition at line 2099 of file copasiui3window.cpp.

References checkPendingMessages(), CCopasiMessage::clearDeque(), CQMessageBox::critical(), FROM_UTF8, CCopasiRootContainer::getConfiguration(), CCopasiMessage::getLastMessage(), mpDataModelGUI, mpListView, CConfigurationFile::save(), CMIRIAMResourceObject::setMIRIAMResources(), slotFileSaveFinished(), ListViews::switchToOtherWidget(), and DataModelGUI::updateMIRIAMResourceContents().

Referenced by slotUpdateMIRIAM().

{
  disconnect(mpDataModelGUI, SIGNAL(finished(bool)), this, SLOT(slotFileSaveFinished(bool)));
  QCursor oldCursor = cursor();
  setCursor(Qt::WaitCursor);

  if (!success)
    {
      setCursor(oldCursor);
      QString Message = "Error while updating MIRIAM" + QString("!\n\n");
      Message += FROM_UTF8(CCopasiMessage::getLastMessage().getText());
      CQMessageBox::critical(this, QString("MIRIAM Error"), Message,
                             QMessageBox::Ok, QMessageBox::Ok);
      CCopasiMessage::clearDeque();
    }

  /* still check for warnings.
  * Maybe events or rules were ignored while reading
  * the file.
  */
  if (success)
    {
      CCopasiRootContainer::getConfiguration()->save();
      CMIRIAMResourceObject::setMIRIAMResources(
        &CCopasiRootContainer::getConfiguration()->getRecentMIRIAMResources());
      mpDataModelGUI->updateMIRIAMResourceContents();
      this->checkPendingMessages();
    }

  CCopasiMessage::clearDeque();
  mpListView->switchToOtherWidget(0, "");
  setCursor(oldCursor);
}

void CopasiUI3Window::suspendAutoSave

(

const bool &

suspend

)

Definition at line 1838 of file copasiui3window.cpp.

References AutoSaveInterval, mpAutoSaveTimer, and mSuspendAutoSave.

Referenced by TaskWidget::commonAfterRunTask(), and TaskWidget::commonBeforeRunTask().

{
  mSuspendAutoSave = suspend;

  if (!mSuspendAutoSave)
    mpAutoSaveTimer->setInterval(AutoSaveInterval); // restart the timer
}

void CopasiUI3Window::updateTitle ( )

private

Definition at line 1794 of file copasiui3window.cpp.

References CDirEntry::baseName(), FixedTitle, FROM_UTF8, CCopasiRootContainer::getDatamodelList(), and TO_UTF8.

Referenced by CopasiUI3Window(), newDoc(), slotFileOpenFinished(), slotFileSaveFinished(), slotImportSBMLFinished(), and slotImportSBMLFromStringFinished().

{
  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  QString FileName = FROM_UTF8((*CCopasiRootContainer::getDatamodelList())[0]->getFileName());

#ifdef WIN32 // Windows allows mixing of '/' and '\' as separator.
  FileName.replace("\\", "/");
#endif

  if (FileName.length() > 40)
    {
#ifdef WIN32
      QRegExp mask("^(([A-Z]:/)?[^/]+/).*(/[^/]+/[^/]+$)");
#else
      QRegExp mask("^((/*)[^/]+/).*(/[^/]+/[^/]+$)");
#endif

      mask.indexIn(FileName);
      FileName = mask.cap(1) + "..." + mask.cap(3);
    }

  std::string BaseName;

  if (!FileName.isEmpty())
    BaseName = CDirEntry::baseName(TO_UTF8(FileName)) + " - ";

  setWindowTitle(FROM_UTF8(BaseName) + FixedTitle + " " + FileName);
}

Member Data Documentation

QString CopasiUI3Window::FixedTitle

private

Definition at line 239 of file copasiui3window.h.

Referenced by about(), CopasiUI3Window(), license(), and updateTitle().

bool CopasiUI3Window::mCommitRequired

private

Definition at line 297 of file copasiui3window.h.

Referenced by importSBMLFromString(), newDoc(), slotFileOpen(), slotFileOpenFinished(), slotFunctionDBLoad(), slotFunctionDBSave(), slotImportSBML(), slotImportSBMLFinished(), and slotImportSBMLFromStringFinished().

bool CopasiUI3Window::mMessageShown

private

Definition at line 300 of file copasiui3window.h.

Referenced by messageShown(), and setMessageShown().

QString CopasiUI3Window::mNewFile

private

Definition at line 296 of file copasiui3window.h.

Referenced by newDoc(), slotFileOpen(), slotFileOpenFinished(), slotFileSaveFinished(), slotImportSBML(), and slotImportSBMLFinished().

QAction* CopasiUI3Window::mpaApplyInitialState

private

Definition at line 256 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QAction* CopasiUI3Window::mpaCapture

private

Definition at line 258 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QAction* CopasiUI3Window::mpaCheckModel

private

Definition at line 255 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QAction* CopasiUI3Window::mpaCloseAllWindows

private

Definition at line 263 of file copasiui3window.h.

Referenced by createActions(), and refreshWindowsMenu().

QAction* CopasiUI3Window::mpaExpandModel

private

Definition at line 260 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaExportODE

private

Definition at line 251 of file copasiui3window.h.

Referenced by CopasiUI3Window(), createActions(), createMenuBar(), newDoc(), slotFileOpenFinished(), and slotImportSBMLFinished().

QAction* CopasiUI3Window::mpaExportSBML

private

Definition at line 250 of file copasiui3window.h.

Referenced by CopasiUI3Window(), createActions(), createMenuBar(), newDoc(), slotFileOpenFinished(), and slotImportSBMLFinished().

QAction* CopasiUI3Window::mpaFontSelectionDialog

private

Definition at line 261 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaFunctionDBLoad

private

Definition at line 248 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaFunctionDBSave

private

Definition at line 247 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaImportSBML

private

Definition at line 249 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaNew

private

Definition at line 241 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QAction* CopasiUI3Window::mpaObjectBrowser

private

Definition at line 253 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and slotObjectBrowserDialogWasClosed().

QAction* CopasiUI3Window::mpaOpen

private

Definition at line 242 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QAction* CopasiUI3Window::mpaOpenCopasiFiles

private

Definition at line 243 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaOpenSBMLFiles

private

Definition at line 244 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaQuit

private

Definition at line 252 of file copasiui3window.h.

Referenced by createActions(), and createMenuBar().

QAction* CopasiUI3Window::mpaSave

private

Definition at line 245 of file copasiui3window.h.

Referenced by CopasiUI3Window(), createActions(), createMenuBar(), createToolBar(), newDoc(), slotFileOpenFinished(), and slotImportSBMLFinished().

QAction* CopasiUI3Window::mpaSaveAs

private

Definition at line 246 of file copasiui3window.h.

Referenced by CopasiUI3Window(), createActions(), createMenuBar(), newDoc(), slotFileOpenFinished(), and slotImportSBMLFinished().

QAction* CopasiUI3Window::mpaSliders

private

Definition at line 254 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), createToolBar(), and slotShowSliders().

QAction* CopasiUI3Window::mpaUpdateInitialState

private

Definition at line 257 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QAction* CopasiUI3Window::mpaUpdateMIRIAM

private

Definition at line 259 of file copasiui3window.h.

Referenced by createActions(), createMenuBar(), and createToolBar().

QTimer* CopasiUI3Window::mpAutoSaveTimer

private

Definition at line 273 of file copasiui3window.h.

Referenced by autoSave(), CopasiUI3Window(), and suspendAutoSave().

QComboBox* CopasiUI3Window::mpBoxSelectFramework

private

Definition at line 237 of file copasiui3window.h.

Referenced by createToolBar().

DataModelGUI* CopasiUI3Window::mpDataModelGUI

private

Definition at line 235 of file copasiui3window.h.

Referenced by CopasiUI3Window(), exportSBMLToString(), getDataModel(), importSBMLFromString(), newDoc(), slotApplyInitialState(), slotConvertToIrreversible(), slotExpandModel(), slotExportMathModel(), slotExportMathModelFinished(), slotExportSBML(), slotExportSBMLFinished(), slotExportSBMLToStringFinished(), slotFileOpen(), slotFileOpenFinished(), slotFileSave(), slotFileSaveAs(), slotFileSaveFinished(), slotFrameworkChanged(), slotFunctionDBLoad(), slotFunctionDBSave(), slotImportSBML(), slotImportSBMLFinished(), slotImportSBMLFromStringFinished(), slotQuit(), slotQuitFinished(), slotUpdateInitialState(), slotUpdateMIRIAM(), slotUpdateMIRIAMFinished(), and ~CopasiUI3Window().

ListViews* CopasiUI3Window::mpListView

private

Definition at line 236 of file copasiui3window.h.

Referenced by CopasiUI3Window(), getMainWidget(), importSBMLFromString(), listViewsFolderChanged(), newDoc(), slotCapture(), slotConvertToIrreversible(), slotFileOpen(), slotFileOpenFinished(), slotFontSelection(), slotImportSBML(), slotImportSBMLFinished(), slotImportSBMLFromStringFinished(), slotUpdateMIRIAMFinished(), and ~CopasiUI3Window().

QThread* CopasiUI3Window::mpMainThread

private

Definition at line 295 of file copasiui3window.h.

Referenced by isMainThread().

QMenu* CopasiUI3Window::mpMenuExamples

private

Definition at line 277 of file copasiui3window.h.

Referenced by createMenuBar().

QMenu* CopasiUI3Window::mpMenuRecentFiles

private

Definition at line 278 of file copasiui3window.h.

Referenced by createMenuBar(), and refreshRecentFileMenu().

QMenu* CopasiUI3Window::mpMenuRecentSBMLFiles

private

Definition at line 285 of file copasiui3window.h.

Referenced by createMenuBar(), and refreshRecentSBMLFileMenu().

CMIRIAMResources* CopasiUI3Window::mpMIRIAMResources

private

Definition at line 293 of file copasiui3window.h.

ObjectBrowserDialog* CopasiUI3Window::mpObjectBrowser

private

Definition at line 270 of file copasiui3window.h.

Referenced by slotObjectBrowserDialogWasClosed(), and slotShowObjectBrowserDialog().

QActionGroup* CopasiUI3Window::mpRecentFilesActionGroup

private

Definition at line 281 of file copasiui3window.h.

Referenced by refreshRecentFileMenu().

QActionGroup* CopasiUI3Window::mpRecentSBMLFilesActionGroup

private

Definition at line 287 of file copasiui3window.h.

Referenced by refreshRecentSBMLFileMenu().

SliderDialog* CopasiUI3Window::mpSliders

private

Definition at line 269 of file copasiui3window.h.

Referenced by CopasiUI3Window(), disableSliders(), importSBMLFromString(), listViewsFolderChanged(), newDoc(), slotFileOpen(), slotFileSaveFinished(), slotFrameworkChanged(), slotImportSBML(), slotQuit(), slotShowSliders(), and ~CopasiUI3Window().

QMenu* CopasiUI3Window::mpTools

private

Definition at line 291 of file copasiui3window.h.

Referenced by createMenuBar().

QActionGroup* CopasiUI3Window::mpWindowsActionGroup

private

Definition at line 288 of file copasiui3window.h.

Referenced by refreshWindowsMenu().

QMenu* CopasiUI3Window::mpWindowsMenu

private

Definition at line 279 of file copasiui3window.h.

Referenced by createMenuBar(), and refreshWindowsMenu().

bool CopasiUI3Window::mQuitApplication

private

Definition at line 298 of file copasiui3window.h.

Referenced by slotQuit(), and slotQuitFinished().

QMap< QAction *, int > CopasiUI3Window::mRecentFilesActionMap

private

Definition at line 280 of file copasiui3window.h.

Referenced by refreshRecentFileMenu(), and slotOpenRecentFile().

QMap< QAction *, int > CopasiUI3Window::mRecentSBMLFilesActionMap

private

Definition at line 286 of file copasiui3window.h.

Referenced by refreshRecentSBMLFileMenu(), and slotOpenRecentSBMLFile().

bool CopasiUI3Window::mSaveAsRequired

private

Definition at line 272 of file copasiui3window.h.

Referenced by newDoc(), slotFileOpenFinished(), slotFileSave(), slotFileSaveFinished(), slotImportSBMLFinished(), and slotImportSBMLFromStringFinished().

bool CopasiUI3Window::mSliderDialogEnabled

private

Definition at line 299 of file copasiui3window.h.

Referenced by CopasiUI3Window(), and disableSliders().

bool CopasiUI3Window::mSuspendAutoSave

private

Definition at line 274 of file copasiui3window.h.

Referenced by autoSave(), and suspendAutoSave().

QList< QPointer<QMainWindow> > CopasiUI3Window::mWindows

private

Definition at line 302 of file copasiui3window.h.

Referenced by addWindow(), CopasiUI3Window(), getWindows(), refreshWindowsMenu(), removeWindow(), slotActivateWindowTriggered(), slotCloseAllWindows(), and ~CopasiUI3Window().

CopasiUI3Window * CopasiUI3Window::pMainWindow = NULL

staticprivate

Definition at line 304 of file copasiui3window.h.

Referenced by create(), getMainWindow(), and isMainThread().

---

The documentation for this class was generated from the following files:

• copasiui3window.h
• copasiui3window.cpp