COPASI API
4.16.103
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#include <CCopasiParameter.h>
Public Attributes | |
bool * | pBOOL |
CRegisteredObjectName * | pCN |
C_FLOAT64 * | pDOUBLE |
std::string * | pEXPRESSION |
std::string * | pFILE |
std::vector< CCopasiParameter * > * | pGROUP |
C_INT32 * | pINT |
std::string * | pKEY |
std::string * | pSTRING |
C_FLOAT64 * | pUDOUBLE |
unsigned C_INT32 * | pUINT |
void * | pVOID |
Definition at line 55 of file CCopasiParameter.h.
bool* CCopasiParameter::Value::pBOOL |
Definition at line 61 of file CCopasiParameter.h.
Referenced by CSEDMLExporter::createScanTask(), CCopasiParameter::createValue(), CScanItemLinear::CScanItemLinear(), CScanItemRandom::CScanItemRandom(), CTrajectoryTask::CTrajectoryTask(), CTSSATask::CTSSATask(), CCopasiParameter::deleteValue(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CScanProblem::fixBuild81(), CScanProblem::getContinueFromCurrentState(), CScanProblem::getOutputInSubtask(), getParameterValue(), SEDMLImporter::importTasks(), CQPreferenceDialog::init(), CTrajectoryTask::initialize(), CTSSATask::initialize(), CCrossSectionTask::initialize(), CTSSAMethod::initializeIntegrationsParameter(), CMIRIAMResource::initializeParameter(), CLyapProblem::initializeParameter(), CNewtonMethod::initializeParameter(), CTrajectoryProblem::initializeParameter(), CTSSAProblem::initializeParameter(), CMCAMethod::initializeParameter(), CCrossSectionProblem::initializeParameter(), CHybridMethodODE45::initializeParameter(), CTauLeapMethod::initializeParameter(), CLyapWolfMethod::initializeParameter(), CStochMethod::initializeParameter(), CConfigurationFile::initializeParameter(), CFitProblem::initializeParameter(), CLsodaMethod::initializeParameter(), COptProblem::initializeParameter(), CHybridMethod::initializeParameter(), CHybridMethodLSODA::initializeParameter(), CExperiment::initializeParameter(), CHybridMethod::initMethod(), CHybridMethodODE45::initMethod(), CHybridMethodLSODA::initMethod(), CScanTask::initSubtask(), CSteadyStateProblem::isJacobianRequested(), CPlotSpecification::isLogX(), CPlotSpecification::isLogY(), CSteadyStateProblem::isStabilityAnalysisRequested(), CNewtonMethod::isValidProblem(), CScanWidgetRandom::load(), CTrajectoryTask::load(), operator<<(), CExperiment::operator=(), CCopasiParameter::operator=(), operator==(), CCSPMethod::predifineAnnotation(), CCopasiXMLInterface::saveParameter(), CTrajectoryTask::setMethodType(), CCrossSectionTask::setMethodType(), CTauLeapMethod::start(), CStochDirectMethod::start(), CCSPMethod::start(), CTrajAdaptiveSA::start(), CStochMethod::start(), and SteadyStateWidget::taskFinishedEvent().
CRegisteredObjectName* CCopasiParameter::Value::pCN |
Definition at line 64 of file CCopasiParameter.h.
Referenced by CSensProblem::copyParameterGroupToSensItem(), CSEDMLExporter::createScanTask(), CCopasiParameter::createValue(), CScanItem::CScanItem(), CCopasiParameter::deleteValue(), CFitProblem::elevateChildren(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), getParameterValue(), CExperimentObjectMap::CDataColumn::initializeParameter(), CCrossSectionProblem::initializeParameter(), COptItem::initializeParameter(), CFitProblem::initializeParameter(), COptProblem::initializeParameter(), operator<<(), CCopasiParameter::operator=(), operator==(), CCopasiXMLInterface::saveParameter(), and CExperimentObjectMap::CDataColumn::setObjectCN().
C_FLOAT64* CCopasiParameter::Value::pDOUBLE |
Definition at line 57 of file CCopasiParameter.h.
Referenced by CFixLocalReactionParameters::changeModel(), CFunctionAnalyzer::constructCallParametersActualValues(), CProcessReportItem::CProcessReportItem(), CSEDMLExporter::createScanTask(), CCopasiParameter::createValue(), CScanItemLinear::CScanItemLinear(), CScanItemRandom::CScanItemRandom(), CCopasiParameter::deleteValue(), CQProgressItemBar::destroy(), CFitItem::elevateChildren(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CODEExporter::exportReacParamsAndFuncs(), CScanProblem::fixBuild81(), getParameterValue(), CReaction::getParameterValue(), SEDMLImporter::importTasks(), COptMethodSteepestDescent::initialize(), COptMethodSRES::initialize(), COptMethodGASR::initialize(), COptMethodHookeJeeves::initialize(), COptMethodLevenbergMarquardt::initialize(), COptMethodPraxis::initialize(), CLyapProblem::initializeParameter(), CTrajectoryProblem::initializeParameter(), CTSSAProblem::initializeParameter(), CCrossSectionProblem::initializeParameter(), COptItem::initializeParameter(), CTrajectoryMethodDsaLsodar::initializeParameter(), CHybridMethod::initializeParameter(), CHybridMethodLSODA::initializeParameter(), CHybridMethod::initMethod(), CHybridMethodLSODA::initMethod(), CHybridMethod::isValidProblem(), CHybridMethodLSODA::isValidProblem(), CTrajectoryMethodDsaLsodar::isValidProblem(), CReactionInterface::loadMappingAndValues(), operator<<(), CCopasiParameter::operator=(), operator==(), CModel::printParameterOverview(), CModelParameter::refreshFromModel(), CSBMLExporter::replace_local_parameters(), CQProgressItemBar::reset(), CCopasiXML::saveModel(), CCopasiXMLInterface::saveParameter(), Curve2DWidget::SaveToCurveSpec(), HistoWidget::SaveToCurveSpec(), CQProgressItemText::setValueFromDOUBLE(), CQProgressItemBar::setValueFromDOUBLE(), CTauLeapMethod::start(), and CTrajAdaptiveSA::start().
std::string* CCopasiParameter::Value::pEXPRESSION |
Definition at line 67 of file CCopasiParameter.h.
Referenced by CCrossSectionProblem::initializeParameter(), COptProblem::initializeParameter(), and CCopasiXMLInterface::saveParameter().
std::string* CCopasiParameter::Value::pFILE |
Definition at line 66 of file CCopasiParameter.h.
Referenced by CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CExperiment::initializeParameter(), CExperiment::operator=(), and CCopasiXMLInterface::saveParameter().
std::vector< CCopasiParameter * >* CCopasiParameter::Value::pGROUP |
Definition at line 62 of file CCopasiParameter.h.
Referenced by CCopasiParameterGroup::addParameter(), CCopasiParameterGroup::beginIndex(), CCopasiParameterGroup::clear(), CCopasiParameter::createValue(), CCopasiParameter::deleteValue(), CExperimentSet::elevateChildren(), CExperimentObjectMap::elevateChildren(), CCopasiParameterGroup::endIndex(), CCopasiParameterGroup::getIndex(), CExperimentObjectMap::getLastNotIgnoredColumn(), CCopasiParameterGroup::getObject(), CCopasiParameterGroup::getParameter(), CCopasiParameterGroup::getUniqueParameterName(), operator==(), CCopasiParameterGroup::removeParameter(), CCopasiXMLInterface::saveParameter(), CExperimentObjectMap::setNumCols(), and CCopasiParameterGroup::size().
C_INT32* CCopasiParameter::Value::pINT |
Definition at line 59 of file CCopasiParameter.h.
Referenced by CCopasiParameter::createValue(), CCopasiParameter::deleteValue(), CQProgressItemBar::destroy(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), getParameterValue(), CStochMethod::initializeParameter(), CHybridMethod::initializeParameter(), CHybridMethod::initMethod(), CHybridMethod::isValidProblem(), CStochDirectMethod::isValidProblem(), CTrajAdaptiveSA::isValidProblem(), CStochMethod::isValidProblem(), CTrajectoryMethodDsaLsodar::isValidProblem(), CScanWidgetRepeat::load(), operator<<(), CCopasiParameter::operator=(), operator==(), CQProgressItemBar::reset(), CCopasiXMLInterface::saveParameter(), CQProgressItemText::setValueFromINT(), CQProgressItemBar::setValueFromINT(), CStochDirectMethod::start(), CTrajAdaptiveSA::start(), and CStochMethod::start().
std::string* CCopasiParameter::Value::pKEY |
Definition at line 65 of file CCopasiParameter.h.
Referenced by CFitItem::addCrossValidation(), CFitItem::addExperiment(), CFitProblem::elevateChildren(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CCopasiXMLParser::COPASIElement::end(), CFitItem::getCrossValidation(), CFitItem::getCrossValidations(), CFitItem::getExperiment(), CFitItem::getExperiments(), getParameterValue(), CExperiment::operator=(), operator==(), and CCopasiXMLInterface::saveParameter().
std::string* CCopasiParameter::Value::pSTRING |
Definition at line 63 of file CCopasiParameter.h.
Referenced by CCopasiParameter::createValue(), CCopasiParameter::deleteValue(), COptProblem::elevateChildren(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CCopasiXMLParser::TaskElement::end(), CPlotItem::getActivity(), getParameterValue(), CQPreferenceDialog::init(), CMIRIAMResource::initializeParameter(), CConfigurationFile::initializeParameter(), CExperiment::initializeParameter(), CScanWidgetRandom::load(), operator<<(), CExperiment::operator=(), CCopasiParameter::operator=(), operator==(), CCopasiXMLInterface::saveParameter(), Curve2DWidget::SaveToCurveSpec(), CPlotItem::setType(), CQProgressItemText::setValueFromSTRING(), CQPreferenceDialog::slotBtnOk(), CopasiUI3Window::slotOpenRecentFile(), and CopasiUI3Window::slotOpenRecentSBMLFile().
C_FLOAT64* CCopasiParameter::Value::pUDOUBLE |
Definition at line 58 of file CCopasiParameter.h.
Referenced by CLyapWolfMethod::calculate(), CSensMethod::CSensMethod(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CSteadyStateMethod::getStabilityResolution(), COptMethodPS::initialize(), COptMethodSA::initialize(), COptMethodNelderMead::initialize(), COptMethodCoranaWalk::initialize(), CNewtonMethod::initialize(), CTSSAMethod::initializeIntegrationsParameter(), CExperimentObjectMap::CDataColumn::initializeParameter(), CSteadyStateMethod::initializeParameter(), CMCAMethod::initializeParameter(), CLyapWolfMethod::initializeParameter(), CLsodaMethod::initializeParameter(), CCrossValidationSet::initializeParameter(), CTrajectoryMethodDsaLsodar::initializeParameter(), CHybridMethodODE45::initMethod(), CHybridMethodLSODA::initMethod(), CLyapWolfMethod::isValidProblem(), CCopasiXMLInterface::saveParameter(), CExperimentObjectMap::CDataColumn::setScale(), CILDMMethod::start(), CILDMModifiedMethod::start(), CCSPMethod::start(), and CLyapWolfMethod::start().
unsigned C_INT32* CCopasiParameter::Value::pUINT |
Definition at line 60 of file CCopasiParameter.h.
Referenced by CSensProblem::copyParameterGroupToSensItem(), CScanItem::createScanItemFromParameterGroup(), CSEDMLExporter::createScanTask(), CCopasiParameter::createValue(), CScanItem::CScanItem(), CScanItemRandom::CScanItemRandom(), CSensProblem::CSensProblem(), CCopasiParameter::deleteValue(), CQProgressItemBar::destroy(), CExperiment::elevateChildren(), CCopasiXMLParser::PlotItemElement::end(), CCopasiXMLParser::PlotSpecificationElement::end(), CScanProblem::fixBuild81(), getParameterValue(), CScanProblem::getSubtask(), CQPreferenceDialog::init(), COptMethodEP::initialize(), COptMethodSteepestDescent::initialize(), CRandomSearch::initialize(), COptMethodDE::initialize(), COptMethodSRES::initialize(), COptMethodPS::initialize(), COptMethodGA::initialize(), COptMethodHookeJeeves::initialize(), COptMethodGASR::initialize(), COptMethodLevenbergMarquardt::initialize(), COptMethodNelderMead::initialize(), COptMethodCoranaWalk::initialize(), COptMethodSS::initialize(), CNewtonMethod::initialize(), CTSSAMethod::initializeIntegrationsParameter(), CExperimentObjectMap::CDataColumn::initializeParameter(), CRecentFiles::initializeParameter(), CLyapProblem::initializeParameter(), CNewtonMethod::initializeParameter(), CTrajectoryProblem::initializeParameter(), CTSSAProblem::initializeParameter(), CCrossSectionProblem::initializeParameter(), CHybridMethodODE45::initializeParameter(), CTauLeapMethod::initializeParameter(), CStochMethod::initializeParameter(), CLsodaMethod::initializeParameter(), CMIRIAMResources::initializeParameter(), CCrossValidationSet::initializeParameter(), CTrajectoryMethodDsaLsodar::initializeParameter(), CHybridMethod::initializeParameter(), CHybridMethodLSODA::initializeParameter(), CExperiment::initializeParameter(), CHybridMethod::initMethod(), CHybridMethodODE45::initMethod(), CHybridMethodLSODA::initMethod(), CScanTask::initSubtask(), CScanWidgetRandom::load(), operator<<(), CExperiment::operator=(), operator==(), CQProgressItemBar::reset(), CCopasiXMLInterface::saveParameter(), Curve2DWidget::SaveToCurveSpec(), CQProgressItemText::setValueFromUINT(), CQProgressItemBar::setValueFromUINT(), CQPreferenceDialog::slotBtnOk(), CTauLeapMethod::start(), CStochDirectMethod::start(), CCSPMethod::start(), CLyapWolfMethod::start(), CTrajAdaptiveSA::start(), and CStochMethod::start().
void* CCopasiParameter::Value::pVOID |
Definition at line 68 of file CCopasiParameter.h.
Referenced by CCopasiParameter::CCopasiParameter(), CProcessReportItem::CProcessReportItem(), CCopasiParameter::createValue(), CCopasiParameter::deleteValue(), CExperimentSet::elevateChildren(), CCopasiParameter::getValuePointer(), CQProgressItemBar::init(), CQProgressItemBar::initFromProcessReportItem(), CScanWidgetScan::load(), Curve2DWidget::LoadFromCurveSpec(), BandedGraphWidget::LoadFromCurveSpec(), HistoWidget::LoadFromCurveSpec(), ScanWidget::loadTask(), operator==(), and CCopasiParameter::setValue().