#include <compare_utilities.h>

Inheritance diagram for CCopasiVector< T >:

Collaboration diagram for CCopasiVector< T >:

Public Types
typedef std::vector< CType * > ::const_iterator	const_iterator

typedef std::vector< CType * > ::iterator	iterator

typedef std::vector< CType * > ::value_type	value_type

Public Types inherited from CCopasiContainer
typedef std::multimap < std::string, CCopasiObject * >	objectMap

Public Types inherited from CCopasiObject
typedef std::set< const CCopasiObject * >	DataObjectSet

typedef std::vector< Refresh * >	DataUpdateSequence

Public Types inherited from CObjectInterface
typedef std::set< const CObjectInterface * >	ObjectSet

typedef std::vector < CObjectInterface * >	UpdateSequence

Public Member Functions
virtual bool	add (const CType &src)

virtual bool	add (CType *src, bool adopt=false)

iterator	begin ()

const_iterator	begin () const

	CCopasiVector (const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const unsigned C_INT32 &flag=CCopasiObject::Vector)

	CCopasiVector (const CCopasiVector< CType > &src, const CCopasiContainer *pParent=NULL)

virtual void	cleanup ()

virtual void	clear ()

void	deepCopy (const CCopasiVector< CType > &source)

iterator	end ()

const_iterator	end () const

virtual size_t	getIndex (const CCopasiObject *pObject) const

virtual const CObjectInterface *	getObject (const CCopasiObjectName &name) const

CCopasiVector< CType > &	operator= (const CCopasiVector< CType > &rhs)

CCopasiVector< CType > &	operator= (const std::vector< CType * > &rhs)

const value_type &	operator[] (const size_t &index) const

value_type &	operator[] (const size_t &index)

virtual void	remove (const size_t &index)

virtual bool	remove (CCopasiObject *pObject)

virtual void	resize (const size_t &newSize)

virtual size_t	size () const

virtual void	swap (const size_t &indexFrom, const size_t &indexTo)

virtual	~CCopasiVector ()

Public Member Functions inherited from CCopasiContainer
virtual bool	add (CCopasiObject *pObject, const bool &adopt=true)

	CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)

	CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)

virtual std::string	getChildObjectUnits (const CCopasiObject *pObject) const

virtual const objectMap &	getObjects () const

virtual std::string	getUnits () const

virtual const CCopasiObject *	getValueObject () const

virtual	~CCopasiContainer ()

Public Member Functions inherited from CCopasiObject
void	addDirectDependency (const CCopasiObject *pObject)

	CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL)

void	clearDirectDependencies ()

void	clearRefresh ()

bool	dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const

void	getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const

virtual CCopasiObjectName	getCN () const

virtual const DataObjectSet &	getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const

virtual const std::string &	getKey () const

CCopasiContainer *	getObjectAncestor (const std::string &type) const

CCopasiDataModel *	getObjectDataModel ()

const CCopasiDataModel *	getObjectDataModel () const

virtual std::string	getObjectDisplayName (bool regular=true, bool richtext=false) const

const std::string &	getObjectName () const

CCopasiContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const

virtual Refresh *	getRefresh () const

UpdateMethod *	getUpdateMethod () const

virtual void *	getValuePointer () const

bool	hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const

bool	hasUpdateMethod () const

bool	isArray () const

bool	isContainer () const

bool	isDataModel () const

bool	isMatrix () const

bool	isNameVector () const

bool	isNonUniqueName () const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const

bool	isReference () const

bool	isRoot () const

bool	isSeparator () const

bool	isStaticString () const

bool	isValueBool () const

bool	isValueDbl () const

bool	isValueInt () const

bool	isValueInt64 () const

bool	isValueString () const

bool	isVector () const

virtual bool	mustBeDeleted (const DataObjectSet &deletedObjects) const

virtual void	print (std::ostream *ostream) const

void	removeDirectDependency (const CCopasiObject *pObject)

void	setDirectDependencies (const DataObjectSet &directDependencies)

bool	setObjectName (const std::string &name)

virtual bool	setObjectParent (const CCopasiContainer *pParent)

void	setObjectValue (const C_FLOAT64 &value)

void	setObjectValue (const C_INT32 &value)

void	setObjectValue (const bool &value)

template<class CType >
void	setRefresh (CType pType, void(CType::method)(void))

template<class CType >
void	setUpdateMethod (CType pType, void(CType::method)(const C_FLOAT64 &))

template<class CType >
void	setUpdateMethod (CType pType, void(CType::method)(const C_INT32 &))

template<class CType >
void	setUpdateMethod (CType pType, void(CType::method)(const bool &))

virtual	~CCopasiObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

virtual	~CObjectInterface ()

Friends
std::ostream &	operator<< (std::ostream &os, const CCopasiVector< CType > &d)

Additional Inherited Members
Static Public Member Functions inherited from CCopasiObject
static std::vector< Refresh * >	buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())

static void	setRenameHandler (CRenameHandler *rh)

Static Public Attributes inherited from CCopasiContainer
static const std::vector < CCopasiContainer * >	EmptyList

Protected Types inherited from CCopasiObject
enum	Flag { Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8, Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80, ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800, Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000, Root = 0x10000, Gui = 0x20000 }

Protected Member Functions inherited from CCopasiContainer
template<class CType >
CCopasiObject *	addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)

template<class CType >
CCopasiObject *	addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)

template<class CType >
CCopasiObject *	addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)

void	initObjects ()

Protected Member Functions inherited from CCopasiObject
	CCopasiObject ()

	CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)

Protected Attributes inherited from CCopasiContainer
objectMap	mObjects

Static Protected Attributes inherited from CCopasiObject
static CRenameHandler *	smpRenameHandler = NULL

Detailed Description

template<typename T>
class CCopasiVector< T >

CCopasiXMLInterface class. The class CCopasiXMLInterface is the interface to various XML document containing COPASI relevant information.

Created for COPASI by Stefan Hoops 2003

Definition at line 34 of file compare_utilities.h.

Member Typedef Documentation

template<typename T>

typedef std::vector< CType * >::const_iterator CCopasiVector< T >::const_iterator

Definition at line 57 of file CCopasiVector.h.

template<typename T>

typedef std::vector< CType * >::iterator CCopasiVector< T >::iterator

Definition at line 56 of file CCopasiVector.h.

template<typename T>

typedef std::vector< CType * >::value_type CCopasiVector< T >::value_type

Definition at line 55 of file CCopasiVector.h.

Constructor & Destructor Documentation

template<typename T>

CCopasiVector< T >::CCopasiVector	(	const std::string &	name = `"NoName"`,
		const CCopasiContainer *	pParent = `NULL`,
		const unsigned C_INT32 &	flag = `CCopasiObject::Vector`
	)

inline

Default constructor

Parameters

const	const std::string & name (Default: "NoName")
const	CCopasiContainer * pParent (Default: NULL)
const	size_t & flag (Default: flag \| CCopasiObject::Vector)

Definition at line 68 of file CCopasiVector.h.

                                            :
       std::vector< CType * >(),
       CCopasiContainer(name, pParent, "Vector", flag | CCopasiObject::Vector)
   {CONSTRUCTOR_TRACE;}

template<typename T>

CCopasiVector< T >::CCopasiVector	(	const CCopasiVector< CType > &	src,
		const CCopasiContainer *	pParent = `NULL`
	)

inline

Copy constructor

Parameters

const	CCopasiVector < CType > & src
const	CCopasiContainer * pParent (Default: NULL)

Definition at line 81 of file CCopasiVector.h.

                                                         :
       std::vector< CType * >(src),
       CCopasiContainer(src, pParent)
   {
     CONSTRUCTOR_TRACE;
 
     size_t i, imax = size();
     iterator Target = begin();
     const_iterator Source = src.begin();
 
     for (i = 0; i < imax; i++, Target++, Source++)
       {
         try
           {
             *Target = new CType(**Source, this);
           }
         catch (...)
           {
             *Target = NULL;
           }
 
         if (*Target == NULL)
           CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCopasiBase + 1, imax * sizeof(CType));
       }
   }

template<typename T>

virtual CCopasiVector< T >::~CCopasiVector ( )

inlinevirtual

Destructor

Definition at line 111 of file CCopasiVector.h.

   {
     cleanup();
     DESTRUCTOR_TRACE;
   }

Member Function Documentation

template<typename T>

virtual bool CCopasiVector< T >::add ( const CType & src )

inlinevirtual

Add a copy of the object to the end of the vector.

Parameters

const CType & src

Returns: bool success.

Reimplemented in CCopasiVectorN< CType >.

Definition at line 223 of file CCopasiVector.h.

   {
     CType * Element;
 
     try
       {
         Element = new CType(src);
       }
     catch (...)
       {
         Element = NULL;
       }
 
     if (Element == NULL)
       CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCopasiBase + 1, sizeof(CType));
 
     // This is not very efficient !!!
     // It results in a lot of resizing of the vector !!!
     std::vector< CType * >::push_back(Element);
     return CCopasiContainer::add(Element);
   }

template<typename T>

virtual bool CCopasiVector< T >::add	(	CType *	src,
		bool	adopt = `false`
	)

inlinevirtual

Add an object to the end of the vector, if adobt is true the vector. becomes the parent of the object.

Parameters

CType	* src
const	bool & adopt (Default: false)

Returns: bool success

Definition at line 275 of file CCopasiVector.h.

   {
     // This is not very efficient !!!
     // It results in a lot of resizing of the vector !!!
     std::vector< CType * >::push_back(src);
     return CCopasiContainer::add(src, adopt);
   }

template<typename T>

iterator CCopasiVector< T >::begin ( )

inline

Definition at line 185 of file CCopasiVector.h.

186 {return std::vector< CType * >::begin();}

template<typename T>

const_iterator CCopasiVector< T >::begin ( ) const

inline

Definition at line 188 of file CCopasiVector.h.

189 {return std::vector< CType * >::begin();}

template<typename T>

virtual void CCopasiVector< T >::cleanup ( )

inlinevirtual

Cleanup

Reimplemented in CReportDefinitionVector, and COutputDefinitionVector.

Definition at line 200 of file CCopasiVector.h.

Referenced by CModel::buildMoieties(), CPlotSpecification::cleanup(), CFunctionParameters::cleanup(), CChemEq::cleanup(), CFunctionDB::cleanup(), CCompartment::cleanup(), CKinFunction::createParameters(), CCopasiVector< CLGeneralGlyph >::deepCopy(), CSSAMethod::initialize(), CModel::load(), CCopasiVectorS< CMetabOld >::load(), CCopasiVectorNS< CMetab >::load(), CMIRIAMInfo::loadBiologicalDescriptions(), CMIRIAMInfo::loadCreators(), CMIRIAMInfo::loadModifications(), CMIRIAMInfo::loadReferences(), CCopasiVector< CLGeneralGlyph >::operator=(), and CCopasiVector< CLGeneralGlyph >::~CCopasiVector().

   {
     iterator it = begin();
     iterator End = end();
 
     for (; it != End; it++)
       if (*it)
         if ((*it)->getObjectParent() == this)
           {
             CCopasiContainer::remove(*it);
             (*it)->setObjectParent(NULL);
             delete(*it);
             *it = NULL;
           }
 
     CCopasiVector< CType >::clear();
   }

template<typename T>

virtual void CCopasiVector< T >::clear ( )

inlinevirtual

Definition at line 431 of file CCopasiVector.h.

Referenced by CCopasiVector< CLGeneralGlyph >::cleanup(), CModel::clearMoieties(), CMathModel::compile(), CMathContainer::init(), CModel::initializeMetabolites(), CQEventWidget1::loadFromEvent(), CLGeneralGlyph::operator=(), CCopasiXMLParser::ListOfModelParameterSetsElement::start(), CCopasiXMLParser::ListOfReactionsElement::start(), CCopasiXMLParser::ListOfCompartmentsElement::start(), and CExperiment::updateFittedPoints().

   {
     size_t OldSize = size();
 
     if (OldSize == 0) return; // Nothing to do.
 
     iterator Target = begin();
     iterator End = end();
 
     for (; Target != End; Target++)
       if (*Target)
         {
           if ((*Target)->getObjectParent() == this)
             {
               CCopasiContainer::remove(*Target);
               (*Target)->setObjectParent(NULL);
               delete *Target;
             }
           else
             CCopasiContainer::remove(*Target);
         }
 
     std::vector< CType * >::resize(0);
   }

template<typename T>

void CCopasiVector< T >::deepCopy ( const CCopasiVector< CType > & source )

inline

This creates a deep copy of the source, i.e., all objects are copied and the parent of these copies is the current vector.

Parameters

const CCopasiVector< CType > & source

Definition at line 160 of file CCopasiVector.h.

Referenced by CFunctionParameters::operator=().

   {
     cleanup();
     resize(source.size());
 
     size_t i, imax = size();
     iterator Target = begin();
     const_iterator Source = source.begin();
 
     for (i = 0; i < imax; i++, Target++, Source++)
       {
         try
           {
             *Target = new CType(**Source, this);
           }
         catch (...)
           {
             *Target = NULL;
           }
 
         if (*Target == NULL)
           CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCopasiBase + 1, imax * sizeof(CType));
       }
   }

template<typename T>

iterator CCopasiVector< T >::end ( )

inline

Definition at line 191 of file CCopasiVector.h.

Referenced by CQLayoutScene::addGlyph(), CMathContainer::allocate(), CModel::appendDependentCompartments(), CModel::appendDependentEvents(), CFunctionDB::appendDependentFunctions(), CModel::appendDependentMetabolites(), CModel::appendDependentModelValues(), CModel::appendDependentReactions(), CCopasiDataModel::appendDependentTasks(), CMathModel::applyInitialValues(), SBMLImporter::applyStoichiometricExpressions(), CLayoutState::applyTo(), CSBMLExporter::assignSBMLIdsToReactions(), DataModelGUI::buildChangedObjects(), CModel::buildDependencyGraphs(), CMathModel::buildDependendRefreshList(), CModel::buildInitialRefreshSequence(), CModel::buildInitialSequence(), CBitPatternMethod::buildKernelMatrix(), CBitPatternTreeMethod::buildKernelMatrix(), CSSAMethod::buildKineticMatrix(), CModel::buildNonSimulatedSequence(), CModel::buildSimulatedSequence(), CModel::buildStateTemplate(), CModel::buildStoi(), CModel::buildUserOrder(), CLNAMethod::calculateCovarianceMatrixReduced(), CModel::calculateElasticityMatrix(), CMCAMethod::calculateUnscaledElasticities(), CSBMLExporter::check_for_spatial_size_units(), CSBMLExporter::checkForInitialAssignments(), CSBMLExporter::checkForODESpeciesInNonfixedCompartment(), CFixLocalReactionParameters::checkModel(), CLayout::CLayout(), CLayoutState::CLayoutState(), CCopasiVector< CLGeneralGlyph >::cleanup(), CCopasiVector< CLGeneralGlyph >::clear(), CCopasiDataModel::commonAfterLoad(), CMathModel::compile(), CEvent::compile(), CMetab::compile(), CReaction::compile(), CMathEvent::compile(), CModel::compile(), CMathContainer::compileEvents(), CModel::compileEvents(), CMathObject::compilePropensity(), contains_necessary_mass_action_elements(), containsKey(), CModel::convert2NonReversible(), CQSpeciesDetail::copy(), CQCompartment::copy(), ReactionsWidget1::copy(), CQConnectionGraphicsItem::CQConnectionGraphicsItem(), CSBMLExporter::createCompartments(), SBMLImporter::createCReactionFromReaction(), COutputAssistant::createDefaultOutput(), CSBMLExporter::createEvents(), CMathObject::createExtensiveReactionRateExpression(), CModelParameterSet::createFromModel(), CCopasiSpringLayout::createLayout(), CSBMLExporter::createMetabolites(), CSBMLExporter::createParameters(), CSBMLExporter::createReactions(), CQEventDM::data(), CQLayoutsWidget::enterProtected(), CSBMLExporter::exportEventAssignments(), CCopasiDataModel::exportMathModel(), CCopasiDataModel::exportMathModelToString(), CQLayoutScene::fillFromLayout(), CSBMLExporter::findAvogadro(), findObjectByDisplayName(), CChemEq::getCompartments(), CObjectLists::getEventTargets(), getFunctionForKey(), CObjectLists::getListOfConstObjects(), getMetabGlyphForKey(), CEFMTask::getNetReactionData(), getQuantityParameterOrValue(), CEFMTask::getSpeciesChanges(), getTextForItem(), CModel::getTreesWithDiscontinuities(), CFunctionDB::getUsedFunctions(), CSBMLExporter::hasVolumeAssignment(), CopasiPlot::initFromSpec(), QConservedSpeciesAnimation::initialize(), QFluxModeAnimation::initialize(), QTimeCourseAnimation::initialize(), CMathContainer::initializeMathObjects(), CModel::initializeMetabolites(), CSteadyStateMethod::isEquilibrium(), CSBMLExporter::isEventSBMLCompatible(), CSBMLExporter::isModelSBMLCompatible(), CTSSAMethod::isValidProblem(), CMCAMethod::isValidProblem(), CLNAMethod::isValidProblem(), CFunctionDB::listDependentTrees(), CQMoietiesTaskResult::load(), CQBrowserPaneDM::load(), StateSubwidget::loadCompartments(), CQEventWidget1::loadFromEvent(), CQPlotSubwidget::loadFromPlotSpec(), StateSubwidget::loadMetabolites(), StateSubwidget::loadModelValues(), StateSubwidget::loadReactions(), moveObject(), CEvent::mustBeDeleted(), CCopasiVector< CLGeneralGlyph >::operator=(), CMoietiesProblem::printResult(), CEFMProblem::printResult(), CFunctionDB::removeFunction(), SBMLImporter::removeUnusedFunctions(), CCopasiVector< CLGeneralGlyph >::resize(), CCopasiXML::saveModel(), CQEventWidget1::saveToEvent(), CMCAMethod::scaleMCA(), CQNewMainWindow::selectMetabolite(), CQNewMainWindow::selectReaction(), SBMLImporter::setInitialValues(), CChemEq::setMultiplicity(), CQParameterOverviewWidget::slotBtnNew(), CQParameterOverviewWidget::slotBtnSaveAs(), CTauLeapMethod::start(), CStochDirectMethod::start(), CTrajAdaptiveSA::start(), CTrajectoryMethodDsaLsodar::start(), CLayoutState::tagLayout(), CExperiment::updateFittedPointValues(), CExperiment::updateFittedPointValuesFromExtendedTimeSeries(), updateLayoutList(), CModel::updateMoietyValues(), updateRenderInformationList(), and CModel::updateSimulatedValues().

192 {return std::vector< CType * >::end();}

template<typename T>

const_iterator CCopasiVector< T >::end ( ) const

inline

Definition at line 194 of file CCopasiVector.h.

195 {return std::vector< CType * >::end();}

template<typename T>

virtual size_t CCopasiVector< T >::getIndex ( const CCopasiObject * pObject ) const

inlinevirtual

Retrieve the index of the pointed to object in the vector. If the object is not found C_INVALID_INDEX is returned.

Parameters

const CCopasiObject * pObject

Returns: size_t index

Definition at line 462 of file CCopasiVector.h.

Referenced by CQReportDefinition::btnDeleteReportClicked(), CLNAMethod::calculateCovarianceMatrixReduced(), CModel::createMetabolite(), CCopasiObject::getCN(), CCopasiVector< CLGeneralGlyph >::remove(), COutputDefinitionVector::removePlotSpec(), CReportDefinitionVector::removeReportDefinition(), CQReportDM::removeRows(), CQLayoutsDM::removeRows(), CHybridMethodODE45::setupBalances(), CHybridMethod::setupBalances(), CHybridMethodLSODA::setupBalances(), CStochMethod::setupDependencyGraphAndBalances(), and CHybridMethodODE45::setupMetab2React().

   {
     size_t i, imax = size();
     const_iterator Target = begin();
 
     for (i = 0; i < imax; i++, Target++)
       {
         const CCopasiObject * pTarget = static_cast< const CCopasiObject * >(*Target);
 
         if (pTarget == pObject)
           {
             return i;
           }
       }
 
     return C_INVALID_INDEX;
   }

template<typename T>

virtual const CObjectInterface* CCopasiVector< T >::getObject ( const CCopasiObjectName & name ) const

inlinevirtual

Retrieve a the CCopasiObject with the given name.

Parameters

const CCopasiObjectName &name

Returns: const CObjectInterface * object

Reimplemented from CCopasiContainer.

Reimplemented in CCopasiVectorN< CType >, CCopasiVectorN< CReaction >, CCopasiVectorN< CEventAssignment >, CCopasiVectorN< CFunctionParameter >, CCopasiVectorN< CCopasiTask >, CCopasiVectorN< CPlotSpecification >, CCopasiVectorN< CCompartment >, CCopasiVectorN< CModelParameterSet >, CCopasiVectorN< CEvent >, CCopasiVectorN< CMetab >, CCopasiVectorN< CFunction >, CCopasiVectorN< CModelValue >, and CCopasiVectorN< CReportDefinition >.

Definition at line 364 of file CCopasiVector.h.

   {
     size_t Index = name.getElementIndex();
 
     if (Index < size())
       {
         CCopasiObject * pObject = *(begin() + Index);
 
         if (name.getObjectType() == pObject->getObjectType())
           return pObject; //exact match of type and name
 
         if (name.getObjectName() == "")
           return pObject; //cn contains no "="; type cannot be checked
       }
 
     return NULL;
   }

template<typename T>

CCopasiVector< CType >& CCopasiVector< T >::operator= ( const CCopasiVector< CType > & rhs )

inline

Assignment operator. The effect of this operator is that both vectors will share the same objects. However, the parentship of the objects is not affected This means that the assigned vector must be used with some care.

Parameters

const CCopasiVector< CType > & rhs

Returns: CCopasiVector< CType > & lhs

Definition at line 124 of file CCopasiVector.h.

Referenced by CCopasiVectorN< CReportDefinition >::operator=().

   {
     cleanup();
 
     const_iterator it = rhs.begin();
     const_iterator end = rhs.end();
 
     for (; it != end; ++it)
       add(*it, false);
 
     return *this;
   }

template<typename T>

CCopasiVector< CType >& CCopasiVector< T >::operator= ( const std::vector< CType * > & rhs )

inline

Assignment operator.

Parameters

const std::vector< CType * > & rhs

Returns: CCopasiVector< CType > & lhs

Definition at line 142 of file CCopasiVector.h.

   {
     cleanup();
 
     typename std::vector< CType * >::const_iterator it = rhs.begin();
     typename std::vector< CType * >::const_iterator end = rhs.end();
 
     for (; it != end; ++it)
       add(*it, false);
 
     return *this;
   }

template<typename T>

const value_type& CCopasiVector< T >::operator[] ( const size_t & index ) const

inline

Retrieve the indexed object.

Parameters

const size_t & index

Returns: const value_type & object

Definition at line 338 of file CCopasiVector.h.

Referenced by CCopasiVectorN< CReportDefinition >::operator[]().

   {
     if (!(index < size()))
       CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCCopasiVector + 3, index, size() - 1);
 
     return *(begin() + index);
   }

template<typename T>

value_type& CCopasiVector< T >::operator[] ( const size_t & index )

inline

Retrieve the indexed object.

Parameters

const size_t & index

Returns: value_type & object

Definition at line 351 of file CCopasiVector.h.

   {
     if (!(index < size()))
       CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCCopasiVector + 3, index, size() - 1);
 
     return *(begin() + index);
   }

template<typename T>

virtual void CCopasiVector< T >::remove ( const size_t & index )

inlinevirtual

Removes the index-th element from the vector

Parameters

const size_t & index

Definition at line 287 of file CCopasiVector.h.

Referenced by CQReportDefinition::btnDeleteReportClicked(), contains_necessary_mass_action_elements(), SliderDialog::getCSlidersForObject(), CCopasiVectorN< CReportDefinition >::remove(), CMIRIAMInfo::removeBiologicalDescription(), CLRenderInformationBase::removeColorDefinition(), CMIRIAMInfo::removeCreator(), CCopasiRootContainer::removeDatamodel(), CLRenderInformationBase::removeGradientDefinition(), CLRenderInformationBase::removeLineEnding(), CModel::removeMetabolite(), CMIRIAMInfo::removeModification(), COutputDefinitionVector::removePlotSpec(), CMIRIAMInfo::removeReference(), CReportDefinitionVector::removeReportDefinition(), CQReportDM::removeRows(), SliderDialog::removeSlider(), and CQEventWidget1::slotDeleteTarget().

   {
     if (!(index < size()))
       return;
 
     iterator Target = begin() + index;
 
     if (*Target)
       {
         if ((*Target)->getObjectParent() == this)
           {
             //                (*Target)->cleanup();
             delete *Target;
           }
         else
           {
             CCopasiContainer::remove(*Target);
             std::vector< CType * >::erase(Target, Target + 1);
           }
       }
   }

template<typename T>

virtual bool CCopasiVector< T >::remove ( CCopasiObject * pObject )

inlinevirtual

Removes the pointed to object from the vector

Parameters

CCopasiObject * pObject

Returns: bool success

Reimplemented from CCopasiContainer.

Definition at line 314 of file CCopasiVector.h.

   {
     const size_t index = getIndex(pObject);
 
     bool success = true;
 
     if (index != C_INVALID_INDEX)
       {
         iterator Target = begin() + index;
         std::vector< CType * >::erase(Target, Target + 1);
       }
     else
       success = false;
 
     success &= CCopasiContainer::remove(pObject);
 
     return success;
   }

template<typename T>

virtual void CCopasiVector< T >::resize ( const size_t & newSize )

inlinevirtual

Resizes the vector but does not create new member objects

Parameters

const size_t & newSize

Definition at line 393 of file CCopasiVector.h.

Referenced by CCopasiVector< CLGeneralGlyph >::deepCopy(), CModel::initializeMetabolites(), CCopasiVectorS< CMetabOld >::load(), CCopasiVectorNS< CMetab >::load(), CCSPMethod::predifineAnnotation(), CCSPMethod::setAnnotationM(), and CCSPMethod::start().

   {
     size_t OldSize = size();
 
     if (OldSize == newSize) return; // Nothing to do.
 
     if (OldSize < newSize)
       {
         std::vector< CType * >::resize(newSize);
 
         size_t i;
         iterator Target = begin() + OldSize;
 
         for (i = OldSize; i < newSize; i++, Target++)
           *Target = NULL;
       }
     else
       {
         iterator Target = begin() + newSize;
         iterator End = end();
 
         for (; Target != End; Target++)
           if (*Target)
             {
               if ((*Target)->getObjectParent() == this)
                 {
                   CCopasiContainer::remove(*Target);
                   (*Target)->setObjectParent(NULL);
                   delete *Target;
                 }
               else
                 CCopasiContainer::remove(*Target);
             }
 
         std::vector< CType * >::resize(newSize);
       }
   }

template<typename T>

virtual size_t CCopasiVector< T >::size ( ) const

inlinevirtual

Retrieves the size of the vector

Returns: size_t size

Definition at line 386 of file CCopasiVector.h.

387 {return std::vector< CType * >::size();}

template<typename T>

virtual void CCopasiVector< T >::swap	(	const size_t &	indexFrom,
		const size_t &	indexTo
	)

inlinevirtual

Swap two objects in the vector.

Parameters

const	size_t & indexFrom
const	size_t & indexTo

Definition at line 250 of file CCopasiVector.h.

Referenced by CFunctionParameters::swap().

   {
     size_t Size = size();
 
     if (!(indexFrom < Size))
       CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCCopasiVector + 3, indexFrom, Size - 1);
 
     if (!(indexTo < Size))
       CCopasiMessage ex(CCopasiMessage::EXCEPTION, MCCopasiVector + 3, indexTo, Size - 1);
 
     iterator from = begin() + indexFrom;
     iterator to = begin() + indexTo;
 
     value_type tmp = *from;
     *from = *to;
     *to = tmp;
   }

Friends And Related Function Documentation

template<typename T>

std::ostream& operator<<	(	std::ostream &	os,
		const CCopasiVector< CType > &	d
	)

friend

ostream operator

Parameters

std::ostream	& os
const	CCopasiVector<CType> & d

Returns: std::ostream & os

Definition at line 870 of file CCopasiVector.h.

 {
   os << "   +++Vektor;  size: " << d.size() << std::endl;
 
   unsigned int i;
 
   for (i = 0; i < d.size(); i++)
     os << "   " << *(d[i]);
 
   if (d.size() == 0)
     os << "   empty" << std::endl;
 
   os << "   ---Vektor" << std::endl;
 
   return os;
 }

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Friends

Additional Inherited Members

Detailed Description

template<typename T> class CCopasiVector< T >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

template<typename T>
class CCopasiVector< T >