test000060 Class Reference

#include <test000060.h>

Inheritance diagram for test000060:

Collaboration diagram for test000060:

Public Member Functions
void	setUp ()
void	tearDown ()
void	test_bug_1026 ()

Static Protected Attributes
static const char *	MODEL_STRING1
static CCopasiDataModel *	pCOPASIDATAMODEL = NULL

Private Member Functions
	CPPUNIT_TEST (test_bug_1026)
	CPPUNIT_TEST_SUITE (test000060)
	CPPUNIT_TEST_SUITE_END ()

Detailed Description

This test checks if the constant and boundaryCondition flags are set correctly when a FIXED metabolite is changed back to status REACTIONS.

Definition at line 31 of file test000060.h.

Member Function Documentation

test000060::CPPUNIT_TEST ( test_bug_1026  )

private

test000060::CPPUNIT_TEST_SUITE ( test000060  )

private

test000060::CPPUNIT_TEST_SUITE_END ( )

private

void test000060::setUp

(

)

Definition at line 36 of file test000060.cpp.

References CCopasiRootContainer::addDatamodel(), CCopasiRootContainer::init(), and pCOPASIDATAMODEL.

{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  // Create the global data model.
  pCOPASIDATAMODEL = CCopasiRootContainer::addDatamodel();
}

void test000060::tearDown

(

)

Definition at line 44 of file test000060.cpp.

References CCopasiRootContainer::destroy().

{
  CCopasiRootContainer::destroy();
}

void test000060::test_bug_1026

(

)

Definition at line 49 of file test000060.cpp.

References CModel::buildInitialRefreshSequence(), CCopasiDataModel::exportSBMLToString(), CCopasiDataModel::getCurrentSBMLDocument(), CModel::getMetabolites(), CCopasiDataModel::getModel(), CCopasiDataModel::importSBMLFromString(), MODEL_STRING1, pCOPASIDATAMODEL, CModelEntity::REACTIONS, and CCopasiVector< T >::size().

{
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  CPPUNIT_ASSERT(pDataModel->importSBMLFromString(test000060::MODEL_STRING1));
  CPPUNIT_ASSERT(pDataModel->getModel() != NULL);
  const SBMLDocument* pDocument = pDataModel->getCurrentSBMLDocument();
  const Model* pSBMLModel = pDocument->getModel();
  CPPUNIT_ASSERT(pSBMLModel != NULL);
  CPPUNIT_ASSERT(pSBMLModel->getNumFunctionDefinitions() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumCompartments() == 1);
  CPPUNIT_ASSERT(pSBMLModel->getNumSpecies() == 1);
  CPPUNIT_ASSERT(pSBMLModel->getNumReactions() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumRules() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumParameters() == 0);
  // check if the species is constant and has boundaryCondition set to true
  const Species* pSpecies = pSBMLModel->getSpecies(0);
  CPPUNIT_ASSERT(pSpecies != NULL);
  CPPUNIT_ASSERT(pSpecies->getConstant() == true);
  CPPUNIT_ASSERT(pSpecies->getBoundaryCondition() == true);
  // now change the status of the species in the underlying COPASI model
  CPPUNIT_ASSERT(pDataModel->getModel()->getMetabolites().size() == 1);
  CMetab* pMetab = pDataModel->getModel()->getMetabolites()[0];
  pMetab->setStatus(CModelEntity::REACTIONS);
  std::set<const CCopasiObject*> changedObjects;
  changedObjects.insert(pMetab);
  std::vector<Refresh*> refreshes = pDataModel->getModel()->buildInitialRefreshSequence(changedObjects);
  std::vector<Refresh*>::iterator refreshIt = refreshes.begin(), refreshEndit = refreshes.end();

  while (refreshIt != refreshEndit)
    {
      (**refreshIt++)();
    }

  CPPUNIT_ASSERT(pDataModel->exportSBMLToString(NULL, 2, 1).empty() == false);
  pDocument = pDataModel->getCurrentSBMLDocument();
  pSBMLModel = pDocument->getModel();
  CPPUNIT_ASSERT(pSBMLModel != NULL);
  CPPUNIT_ASSERT(pSBMLModel->getNumFunctionDefinitions() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumCompartments() == 1);
  CPPUNIT_ASSERT(pSBMLModel->getNumSpecies() == 1);
  CPPUNIT_ASSERT(pSBMLModel->getNumReactions() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumRules() == 0);
  CPPUNIT_ASSERT(pSBMLModel->getNumParameters() == 0);
  // check if the species is constant and has boundaryCondition set to false
  pSpecies = pSBMLModel->getSpecies(0);
  CPPUNIT_ASSERT(pSpecies != NULL);
  CPPUNIT_ASSERT(pSpecies->getConstant() == false);
  CPPUNIT_ASSERT(pSpecies->getBoundaryCondition() == false);
}

Member Data Documentation

const char * test000060::MODEL_STRING1

staticprotected

Initial value:

=
  "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
  "<sbml xmlns=\"http://www.sbml.org/sbml/level2\" metaid=\"_000000\" level=\"2\" version=\"1\">\n"
  "  <model metaid=\"_000001\" id=\"bug_1026\" name=\"bug_1026\">\n"
  "    <listOfCompartments>\n"
  "      <compartment metaid=\"_000005\" id=\"compartment_1\" name=\"compartment_1\" size=\"1e-16\">\n"
  "      </compartment>\n"
  "    </listOfCompartments>\n"
  "    <listOfSpecies>\n"
  "      <species metaid=\"_000006\" id=\"species_1\" name=\"species_1\" compartment=\"compartment_1\" initialAmount=\"1.0\" constant=\"true\" boundaryCondition=\"true\" />\n"
  "    </listOfSpecies>  \n"
  "  </model>\n"
  "</sbml>\n"

Definition at line 38 of file test000060.h.

Referenced by test_bug_1026().

CCopasiDataModel * test000060::pCOPASIDATAMODEL = NULL

staticprotected

Definition at line 39 of file test000060.h.

Referenced by setUp(), and test_bug_1026().

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The documentation for this class was generated from the following files:

• test000060.h
• test000060.cpp