31 #ifndef COPASI_CEFMTask
32 #define COPASI_CEFMTask
57 const unsigned C_INT32 * validMethods);
95 std::ostream * pOstream);
102 virtual bool process(
const bool & useInitialValues);
137 std::string
getReactionEquation(
const std::map< size_t, C_FLOAT64 >::const_iterator & itReaction)
const;
146 const CMetab & metab)
const;
171 std::string getReactionEquationForward(
unsigned C_INT32 index1,
172 unsigned C_INT32 index2)
const;
173 std::string getReactionEquationBackward(
unsigned C_INT32 index1,
174 unsigned C_INT32 index2)
const;
178 #endif // COPASI_CEFMTask
virtual bool process(const bool &useInitialValues)
std::string getNetReaction(const CFluxMode &fluxMode) const
static bool isValidMethod(const unsigned C_INT32 &method, const unsigned C_INT32 *validMethods)
std::string getReactionEquation(const std::map< size_t, C_FLOAT64 >::const_iterator &itReaction) const
std::pair< C_FLOAT64, C_FLOAT64 > getSpeciesChanges(const CFluxMode &fluxMode, const CMetab &metab) const
std::string getFluxModeDescription(const CFluxMode &fluxMode) const
std::map< const CMetab *, C_FLOAT64 > getNetReactionData(const CFluxMode &fluxMode) const
virtual bool initialize(const OutputFlag &of, COutputHandler *pOutputHandler, std::ostream *pOstream)
const std::vector< CFluxMode > & getFluxModes() const
std::string getInternalSpecies(const CFluxMode &fluxMode) const
static const unsigned int ValidMethods[]
CEFMTask(const CCopasiContainer *pParent=NULL)
virtual bool setCallBack(CProcessReport *pCallBack)
virtual bool setMethodType(const int &type)
virtual CCopasiMethod * createMethod(const int &type) const