COPASI API  4.16.103
CCopasiDataModel Member List

This is the complete list of members for CCopasiDataModel, including all inherited members.

Activity enum nameCOutputInterface
add(CCopasiObject *pObject, const bool &adopt=true)CCopasiContainervirtual
addDefaultReports()CCopasiDataModel
addDefaultTasks()CCopasiDataModel
addDirectDependency(const CCopasiObject *pObject)CCopasiObject
addInterface(COutputInterface *pInterface)COutputHandlervirtual
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addReport(const CCopasiTask::Type &taskType)CCopasiDataModel
addTask(const CCopasiTask::Type &taskType)CCopasiDataModel
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
AFTER enum valueCOutputInterface
appendDependentTasks(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependentTasks) const CCopasiDataModel
Array enum valueCCopasiObjectprotected
autoSave()CCopasiDataModel
BEFORE enum valueCOutputInterface
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())CCopasiObjectstatic
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)CCopasiContainer
CCopasiDataModel(const bool withGUI=false)CCopasiDataModel
CCopasiDataModel(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", bool withGUI=false)CCopasiDataModel
CCopasiObject()CCopasiObjectprotected
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)CCopasiObjectprotected
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)CCopasiObject
changed(const bool &changed=true)CCopasiDataModel
clearDirectDependencies()CCopasiObject
clearRefresh()CCopasiObject
close()COutputInterfaceinlinevirtual
CObjectInterface()CObjectInterfaceinline
commonAfterLoad(CProcessReport *pProcessReport, const bool &deleteOldData)CCopasiDataModelprotected
compile(std::vector< CCopasiContainer * > listOfContainer, const CCopasiDataModel *pDataModel)COutputHandlervirtual
compileRefresh(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiDataModel *pDataModel)COutputHandlerprotected
Container enum valueCCopasiObjectprotected
CopasiML enum valueCCopasiDataModelprivate
COutputHandler()COutputHandler
COutputHandler(const COutputHandler &src)COutputHandler
COutputInterface()COutputInterfaceinline
COutputInterface(const COutputInterface &src)COutputInterfaceinline
DataModel enum valueCCopasiObjectprotected
DataObjectSet typedefCCopasiObject
DataUpdateSequence typedefCCopasiObject
deleteOldData()CCopasiDataModel
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const CCopasiObject
DURING enum valueCOutputInterface
EmptyListCCopasiContainerstatic
exportMathModel(const std::string &fileName, CProcessReport *pProcessReport, const std::string &filter, bool overwriteFile=false)CCopasiDataModel
exportMathModelToString(CProcessReport *pProcessReport, const std::string &filter)CCopasiDataModel
exportSBML(const std::string &fileName, bool overwriteFile=false, int sbmlLevel=2, int sbmlVersion=1, bool exportIncomplete=false, bool exportCOPASIMIRIAM=true, CProcessReport *pExportHandler=NULL)CCopasiDataModel
exportSBMLToString(CProcessReport *pExportHandler, int sbmlLevel, int sbmlVersion)CCopasiDataModel
FileType enum nameCCopasiDataModelprivate
finish()COutputHandlervirtual
Flag enum nameCCopasiObjectprotected
Gepasi enum valueCCopasiDataModelprivate
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const CCopasiObject
getChildObjectUnits(const CCopasiObject *pObject) const CCopasiContainervirtual
getCN() const CCopasiObjectvirtual
getCopasi2SBMLMap()CCopasiDataModel
getCurrentSBMLDocument()CCopasiDataModel
getDataObject(const CCopasiObjectName &CN) const CCopasiDataModel
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const CCopasiObjectvirtual
getFileName() const CCopasiDataModel
getGUI()CCopasiDataModel
getInterfaces() const COutputHandler
getKey() const CCopasiObjectvirtual
getListOfLayouts()CCopasiDataModel
getListOfLayouts() const CCopasiDataModel
getModel()CCopasiDataModel
getModel() const CCopasiDataModel
getObject(const CCopasiObjectName &cn) const CCopasiContainervirtual
getObjectAncestor(const std::string &type) const CCopasiObject
getObjectDataModel()CCopasiObject
getObjectDataModel() const CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const CCopasiObjectvirtual
getObjectName() const CCopasiObject
getObjectParent() const CCopasiObject
CCopasiContainer::getObjects() const CCopasiContainervirtual
COutputHandler::getObjects() const COutputInterfaceinlinevirtual
getObjectType() const CCopasiObject
getPlotDefinitionList() const CCopasiDataModel
getPlotDefinitionList()CCopasiDataModel
getPrerequisites() const CCopasiObjectvirtual
getReferenceDirectory() const CCopasiDataModel
getRefresh() const CCopasiObjectvirtual
getReportDefinitionList() const CCopasiDataModel
getReportDefinitionList()CCopasiDataModel
getSBMLFileName() const CCopasiDataModel
getTaskList()CCopasiDataModel
getTaskList() const CCopasiDataModel
getUnits() const CCopasiContainervirtual
getUpdateMethod() const CCopasiObject
getValueObject() const CCopasiContainervirtual
getValuePointer() const CCopasiObjectvirtual
Gui enum valueCCopasiObjectprotected
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const CCopasiObject
hasUpdateMethod() const CCopasiObject
importSBML(const std::string &fileName, CProcessReport *pImportHandler=NULL, const bool &deleteOldData=true)CCopasiDataModel
importSBMLFromString(const std::string &sbmlDocumentText, CProcessReport *pImportHandler=NULL, const bool &deleteOldData=true)CCopasiDataModel
initObjects()CCopasiContainerprotected
isArray() const CCopasiObject
isChanged() const CCopasiDataModel
isContainer() const CCopasiObject
isDataModel() const CCopasiObject
isMaster() const COutputHandler
isMatrix() const CCopasiObject
isNameVector() const CCopasiObject
isNonUniqueName() const CCopasiObject
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const CCopasiObjectvirtual
isReference() const CCopasiObject
isRoot() const CCopasiObject
isSeparator() const CCopasiObject
isStaticString() const CCopasiObject
isValueBool() const CCopasiObject
isValueDbl() const CCopasiObject
isValueInt() const CCopasiObject
isValueInt64() const CCopasiObject
isValueString() const CCopasiObject
isVector() const CCopasiObject
loadModel(std::istream &in, const std::string &pwd, CProcessReport *pProcessReport, const bool &deleteOldData=true)CCopasiDataModel
loadModel(const std::string &fileName, CProcessReport *pProcessReport, const bool &deleteOldData=true)CCopasiDataModel
Matrix enum valueCCopasiObjectprotected
mDataCCopasiDataModelprotected
mInterfacesCOutputHandlerprotected
mLastAddedObjectsCCopasiDataModel
mObjectRefreshesCOutputHandlerprotected
CCopasiContainer::mObjectsCCopasiContainerprotected
COutputHandler::mObjectsCOutputInterfaceprotected
ModelEntity enum valueCCopasiObjectprotected
mOldDataCCopasiDataModelprotected
mpMasterCOutputHandlerprotected
mRenameHandlerCCopasiDataModelprotected
mustBeDeleted(const DataObjectSet &deletedObjects) const CCopasiObjectvirtual
NameVector enum valueCCopasiObjectprotected
newModel(CProcessReport *pProcessReport, const bool &deleteOldData)CCopasiDataModel
NonUniqueName enum valueCCopasiObjectprotected
ObjectFromCN(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiObjectName &objName) const CCopasiDataModel
ObjectFromName(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiObjectName &CN) const CCopasiDataModel
objectMap typedefCCopasiContainer
ObjectSet typedefCObjectInterface
output(const Activity &activity)COutputHandlervirtual
pOldMetabolitesCCopasiDataModel
popData()CCopasiDataModelprotected
print(std::ostream *ostream) const CCopasiObjectvirtual
pushData()CCopasiDataModelprotected
Reference enum valueCCopasiObjectprotected
refresh()COutputHandlerprotected
remove(CCopasiObject *pObject)CCopasiContainervirtual
removeDirectDependency(const CCopasiObject *pObject)CCopasiObject
removeInterface(COutputInterface *pInterface)COutputHandlervirtual
removeLayout(const std::string &key)CCopasiDataModel
removeSBMLIdFromFunctions()CCopasiDataModelprotected
Root enum valueCCopasiObjectprotected
saveModel(const std::string &fileName, CProcessReport *pProcessReport, bool overwriteFile=false, const bool &autoSave=false)CCopasiDataModel
SBML enum valueCCopasiDataModelprivate
SEDML enum valueCCopasiDataModelprivate
separate(const Activity &activity)COutputHandlervirtual
Separator enum valueCCopasiObjectprotected
setDirectDependencies(const DataObjectSet &directDependencies)CCopasiObject
setMaster(COutputHandler *pMaster)COutputHandler
setObjectName(const std::string &name)CCopasiObject
setObjectParent(const CCopasiContainer *pParent)CCopasiObjectvirtual
setObjectValue(const C_FLOAT64 &value)CCopasiObject
setObjectValue(const C_INT32 &value)CCopasiObject
setObjectValue(const bool &value)CCopasiObject
setRefresh(CType *pType, void(CType::*method)(void))CCopasiObjectinline
setRenameHandler(CRenameHandler *rh)CCopasiObjectinlinestatic
setSBMLFileName(const std::string &fileName)CCopasiDataModel
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))CCopasiObjectinline
smpRenameHandlerCCopasiObjectprotectedstatic
StaticString enum valueCCopasiObjectprotected
unset enum valueCCopasiDataModelprivate
UpdateSequence typedefCObjectInterface
ValueBool enum valueCCopasiObjectprotected
ValueDbl enum valueCCopasiObjectprotected
ValueInt enum valueCCopasiObjectprotected
ValueInt64 enum valueCCopasiObjectprotected
ValueString enum valueCCopasiObjectprotected
Vector enum valueCCopasiObjectprotected
~CCopasiContainer()CCopasiContainervirtual
~CCopasiDataModel()CCopasiDataModelvirtual
~CCopasiObject()CCopasiObjectvirtual
~CObjectInterface()CObjectInterfaceinlinevirtual
~COutputHandler()COutputHandlervirtual
~COutputInterface()COutputInterfaceinlinevirtual