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COPASI API
4.16.103
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This is the complete list of members for CCopasiDataModel, including all inherited members.
| Activity enum name | COutputInterface | |
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
| addDefaultReports() | CCopasiDataModel | |
| addDefaultTasks() | CCopasiDataModel | |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addInterface(COutputInterface *pInterface) | COutputHandler | virtual |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| addReport(const CCopasiTask::Type &taskType) | CCopasiDataModel | |
| addTask(const CCopasiTask::Type &taskType) | CCopasiDataModel | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
| AFTER enum value | COutputInterface | |
| appendDependentTasks(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependentTasks) const | CCopasiDataModel | |
| Array enum value | CCopasiObject | protected |
| autoSave() | CCopasiDataModel | |
| BEFORE enum value | COutputInterface | |
| buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiDataModel(const bool withGUI=false) | CCopasiDataModel | |
| CCopasiDataModel(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", bool withGUI=false) | CCopasiDataModel | |
| CCopasiObject() | CCopasiObject | protected |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| changed(const bool &changed=true) | CCopasiDataModel | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| close() | COutputInterface | inlinevirtual |
| CObjectInterface() | CObjectInterface | inline |
| commonAfterLoad(CProcessReport *pProcessReport, const bool &deleteOldData) | CCopasiDataModel | protected |
| compile(std::vector< CCopasiContainer * > listOfContainer, const CCopasiDataModel *pDataModel) | COutputHandler | virtual |
| compileRefresh(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiDataModel *pDataModel) | COutputHandler | protected |
| Container enum value | CCopasiObject | protected |
| CopasiML enum value | CCopasiDataModel | private |
| COutputHandler() | COutputHandler | |
| COutputHandler(const COutputHandler &src) | COutputHandler | |
| COutputInterface() | COutputInterface | inline |
| COutputInterface(const COutputInterface &src) | COutputInterface | inline |
| DataModel enum value | CCopasiObject | protected |
| DataObjectSet typedef | CCopasiObject | |
| DataUpdateSequence typedef | CCopasiObject | |
| deleteOldData() | CCopasiDataModel | |
| dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
| DURING enum value | COutputInterface | |
| EmptyList | CCopasiContainer | static |
| exportMathModel(const std::string &fileName, CProcessReport *pProcessReport, const std::string &filter, bool overwriteFile=false) | CCopasiDataModel | |
| exportMathModelToString(CProcessReport *pProcessReport, const std::string &filter) | CCopasiDataModel | |
| exportSBML(const std::string &fileName, bool overwriteFile=false, int sbmlLevel=2, int sbmlVersion=1, bool exportIncomplete=false, bool exportCOPASIMIRIAM=true, CProcessReport *pExportHandler=NULL) | CCopasiDataModel | |
| exportSBMLToString(CProcessReport *pExportHandler, int sbmlLevel, int sbmlVersion) | CCopasiDataModel | |
| FileType enum name | CCopasiDataModel | private |
| finish() | COutputHandler | virtual |
| Flag enum name | CCopasiObject | protected |
| Gepasi enum value | CCopasiDataModel | private |
| getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
| getCN() const | CCopasiObject | virtual |
| getCopasi2SBMLMap() | CCopasiDataModel | |
| getCurrentSBMLDocument() | CCopasiDataModel | |
| getDataObject(const CCopasiObjectName &CN) const | CCopasiDataModel | |
| getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
| getFileName() const | CCopasiDataModel | |
| getGUI() | CCopasiDataModel | |
| getInterfaces() const | COutputHandler | |
| getKey() const | CCopasiObject | virtual |
| getListOfLayouts() | CCopasiDataModel | |
| getListOfLayouts() const | CCopasiDataModel | |
| getModel() | CCopasiDataModel | |
| getModel() const | CCopasiDataModel | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| CCopasiContainer::getObjects() const | CCopasiContainer | virtual |
| COutputHandler::getObjects() const | COutputInterface | inlinevirtual |
| getObjectType() const | CCopasiObject | |
| getPlotDefinitionList() const | CCopasiDataModel | |
| getPlotDefinitionList() | CCopasiDataModel | |
| getPrerequisites() const | CCopasiObject | virtual |
| getReferenceDirectory() const | CCopasiDataModel | |
| getRefresh() const | CCopasiObject | virtual |
| getReportDefinitionList() const | CCopasiDataModel | |
| getReportDefinitionList() | CCopasiDataModel | |
| getSBMLFileName() const | CCopasiDataModel | |
| getTaskList() | CCopasiDataModel | |
| getTaskList() const | CCopasiDataModel | |
| getUnits() const | CCopasiContainer | virtual |
| getUpdateMethod() const | CCopasiObject | |
| getValueObject() const | CCopasiContainer | virtual |
| getValuePointer() const | CCopasiObject | virtual |
| Gui enum value | CCopasiObject | protected |
| hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| importSBML(const std::string &fileName, CProcessReport *pImportHandler=NULL, const bool &deleteOldData=true) | CCopasiDataModel | |
| importSBMLFromString(const std::string &sbmlDocumentText, CProcessReport *pImportHandler=NULL, const bool &deleteOldData=true) | CCopasiDataModel | |
| initObjects() | CCopasiContainer | protected |
| isArray() const | CCopasiObject | |
| isChanged() const | CCopasiDataModel | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isMaster() const | COutputHandler | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueInt64() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| loadModel(std::istream &in, const std::string &pwd, CProcessReport *pProcessReport, const bool &deleteOldData=true) | CCopasiDataModel | |
| loadModel(const std::string &fileName, CProcessReport *pProcessReport, const bool &deleteOldData=true) | CCopasiDataModel | |
| Matrix enum value | CCopasiObject | protected |
| mData | CCopasiDataModel | protected |
| mInterfaces | COutputHandler | protected |
| mLastAddedObjects | CCopasiDataModel | |
| mObjectRefreshes | COutputHandler | protected |
| CCopasiContainer::mObjects | CCopasiContainer | protected |
| COutputHandler::mObjects | COutputInterface | protected |
| ModelEntity enum value | CCopasiObject | protected |
| mOldData | CCopasiDataModel | protected |
| mpMaster | COutputHandler | protected |
| mRenameHandler | CCopasiDataModel | protected |
| mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
| NameVector enum value | CCopasiObject | protected |
| newModel(CProcessReport *pProcessReport, const bool &deleteOldData) | CCopasiDataModel | |
| NonUniqueName enum value | CCopasiObject | protected |
| ObjectFromCN(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiObjectName &objName) const | CCopasiDataModel | |
| ObjectFromName(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiObjectName &CN) const | CCopasiDataModel | |
| objectMap typedef | CCopasiContainer | |
| ObjectSet typedef | CObjectInterface | |
| output(const Activity &activity) | COutputHandler | virtual |
| pOldMetabolites | CCopasiDataModel | |
| popData() | CCopasiDataModel | protected |
| print(std::ostream *ostream) const | CCopasiObject | virtual |
| pushData() | CCopasiDataModel | protected |
| Reference enum value | CCopasiObject | protected |
| refresh() | COutputHandler | protected |
| remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| removeInterface(COutputInterface *pInterface) | COutputHandler | virtual |
| removeLayout(const std::string &key) | CCopasiDataModel | |
| removeSBMLIdFromFunctions() | CCopasiDataModel | protected |
| Root enum value | CCopasiObject | protected |
| saveModel(const std::string &fileName, CProcessReport *pProcessReport, bool overwriteFile=false, const bool &autoSave=false) | CCopasiDataModel | |
| SBML enum value | CCopasiDataModel | private |
| SEDML enum value | CCopasiDataModel | private |
| separate(const Activity &activity) | COutputHandler | virtual |
| Separator enum value | CCopasiObject | protected |
| setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
| setMaster(COutputHandler *pMaster) | COutputHandler | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
| setSBMLFileName(const std::string &fileName) | CCopasiDataModel | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
| smpRenameHandler | CCopasiObject | protectedstatic |
| StaticString enum value | CCopasiObject | protected |
| unset enum value | CCopasiDataModel | private |
| UpdateSequence typedef | CObjectInterface | |
| ValueBool enum value | CCopasiObject | protected |
| ValueDbl enum value | CCopasiObject | protected |
| ValueInt enum value | CCopasiObject | protected |
| ValueInt64 enum value | CCopasiObject | protected |
| ValueString enum value | CCopasiObject | protected |
| Vector enum value | CCopasiObject | protected |
| ~CCopasiContainer() | CCopasiContainer | virtual |
| ~CCopasiDataModel() | CCopasiDataModel | virtual |
| ~CCopasiObject() | CCopasiObject | virtual |
| ~CObjectInterface() | CObjectInterface | inlinevirtual |
| ~COutputHandler() | COutputHandler | virtual |
| ~COutputInterface() | COutputInterface | inlinevirtual |
1.8.6