COPASI API
4.16.103
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This is the complete list of members for CCopasiDataModel, including all inherited members.
Activity enum name | COutputInterface | |
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
addDefaultReports() | CCopasiDataModel | |
addDefaultTasks() | CCopasiDataModel | |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addInterface(COutputInterface *pInterface) | COutputHandler | virtual |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addReport(const CCopasiTask::Type &taskType) | CCopasiDataModel | |
addTask(const CCopasiTask::Type &taskType) | CCopasiDataModel | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
AFTER enum value | COutputInterface | |
appendDependentTasks(std::set< const CCopasiObject * > candidates, std::set< const CCopasiObject * > &dependentTasks) const | CCopasiDataModel | |
Array enum value | CCopasiObject | protected |
autoSave() | CCopasiDataModel | |
BEFORE enum value | COutputInterface | |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiDataModel(const bool withGUI=false) | CCopasiDataModel | |
CCopasiDataModel(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", bool withGUI=false) | CCopasiDataModel | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
changed(const bool &changed=true) | CCopasiDataModel | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
close() | COutputInterface | inlinevirtual |
CObjectInterface() | CObjectInterface | inline |
commonAfterLoad(CProcessReport *pProcessReport, const bool &deleteOldData) | CCopasiDataModel | protected |
compile(std::vector< CCopasiContainer * > listOfContainer, const CCopasiDataModel *pDataModel) | COutputHandler | virtual |
compileRefresh(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiDataModel *pDataModel) | COutputHandler | protected |
Container enum value | CCopasiObject | protected |
CopasiML enum value | CCopasiDataModel | private |
COutputHandler() | COutputHandler | |
COutputHandler(const COutputHandler &src) | COutputHandler | |
COutputInterface() | COutputInterface | inline |
COutputInterface(const COutputInterface &src) | COutputInterface | inline |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
deleteOldData() | CCopasiDataModel | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
DURING enum value | COutputInterface | |
EmptyList | CCopasiContainer | static |
exportMathModel(const std::string &fileName, CProcessReport *pProcessReport, const std::string &filter, bool overwriteFile=false) | CCopasiDataModel | |
exportMathModelToString(CProcessReport *pProcessReport, const std::string &filter) | CCopasiDataModel | |
exportSBML(const std::string &fileName, bool overwriteFile=false, int sbmlLevel=2, int sbmlVersion=1, bool exportIncomplete=false, bool exportCOPASIMIRIAM=true, CProcessReport *pExportHandler=NULL) | CCopasiDataModel | |
exportSBMLToString(CProcessReport *pExportHandler, int sbmlLevel, int sbmlVersion) | CCopasiDataModel | |
FileType enum name | CCopasiDataModel | private |
finish() | COutputHandler | virtual |
Flag enum name | CCopasiObject | protected |
Gepasi enum value | CCopasiDataModel | private |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
getCN() const | CCopasiObject | virtual |
getCopasi2SBMLMap() | CCopasiDataModel | |
getCurrentSBMLDocument() | CCopasiDataModel | |
getDataObject(const CCopasiObjectName &CN) const | CCopasiDataModel | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getFileName() const | CCopasiDataModel | |
getGUI() | CCopasiDataModel | |
getInterfaces() const | COutputHandler | |
getKey() const | CCopasiObject | virtual |
getListOfLayouts() | CCopasiDataModel | |
getListOfLayouts() const | CCopasiDataModel | |
getModel() | CCopasiDataModel | |
getModel() const | CCopasiDataModel | |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
CCopasiContainer::getObjects() const | CCopasiContainer | virtual |
COutputHandler::getObjects() const | COutputInterface | inlinevirtual |
getObjectType() const | CCopasiObject | |
getPlotDefinitionList() const | CCopasiDataModel | |
getPlotDefinitionList() | CCopasiDataModel | |
getPrerequisites() const | CCopasiObject | virtual |
getReferenceDirectory() const | CCopasiDataModel | |
getRefresh() const | CCopasiObject | virtual |
getReportDefinitionList() const | CCopasiDataModel | |
getReportDefinitionList() | CCopasiDataModel | |
getSBMLFileName() const | CCopasiDataModel | |
getTaskList() | CCopasiDataModel | |
getTaskList() const | CCopasiDataModel | |
getUnits() const | CCopasiContainer | virtual |
getUpdateMethod() const | CCopasiObject | |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiObject | virtual |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
importSBML(const std::string &fileName, CProcessReport *pImportHandler=NULL, const bool &deleteOldData=true) | CCopasiDataModel | |
importSBMLFromString(const std::string &sbmlDocumentText, CProcessReport *pImportHandler=NULL, const bool &deleteOldData=true) | CCopasiDataModel | |
initObjects() | CCopasiContainer | protected |
isArray() const | CCopasiObject | |
isChanged() const | CCopasiDataModel | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMaster() const | COutputHandler | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
loadModel(std::istream &in, const std::string &pwd, CProcessReport *pProcessReport, const bool &deleteOldData=true) | CCopasiDataModel | |
loadModel(const std::string &fileName, CProcessReport *pProcessReport, const bool &deleteOldData=true) | CCopasiDataModel | |
Matrix enum value | CCopasiObject | protected |
mData | CCopasiDataModel | protected |
mInterfaces | COutputHandler | protected |
mLastAddedObjects | CCopasiDataModel | |
mObjectRefreshes | COutputHandler | protected |
CCopasiContainer::mObjects | CCopasiContainer | protected |
COutputHandler::mObjects | COutputInterface | protected |
ModelEntity enum value | CCopasiObject | protected |
mOldData | CCopasiDataModel | protected |
mpMaster | COutputHandler | protected |
mRenameHandler | CCopasiDataModel | protected |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
NameVector enum value | CCopasiObject | protected |
newModel(CProcessReport *pProcessReport, const bool &deleteOldData) | CCopasiDataModel | |
NonUniqueName enum value | CCopasiObject | protected |
ObjectFromCN(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiObjectName &objName) const | CCopasiDataModel | |
ObjectFromName(const std::vector< CCopasiContainer * > &listOfContainer, const CCopasiObjectName &CN) const | CCopasiDataModel | |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
output(const Activity &activity) | COutputHandler | virtual |
pOldMetabolites | CCopasiDataModel | |
popData() | CCopasiDataModel | protected |
print(std::ostream *ostream) const | CCopasiObject | virtual |
pushData() | CCopasiDataModel | protected |
Reference enum value | CCopasiObject | protected |
refresh() | COutputHandler | protected |
remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeInterface(COutputInterface *pInterface) | COutputHandler | virtual |
removeLayout(const std::string &key) | CCopasiDataModel | |
removeSBMLIdFromFunctions() | CCopasiDataModel | protected |
Root enum value | CCopasiObject | protected |
saveModel(const std::string &fileName, CProcessReport *pProcessReport, bool overwriteFile=false, const bool &autoSave=false) | CCopasiDataModel | |
SBML enum value | CCopasiDataModel | private |
SEDML enum value | CCopasiDataModel | private |
separate(const Activity &activity) | COutputHandler | virtual |
Separator enum value | CCopasiObject | protected |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setMaster(COutputHandler *pMaster) | COutputHandler | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setSBMLFileName(const std::string &fileName) | CCopasiDataModel | |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
smpRenameHandler | CCopasiObject | protectedstatic |
StaticString enum value | CCopasiObject | protected |
unset enum value | CCopasiDataModel | private |
UpdateSequence typedef | CObjectInterface | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiDataModel() | CCopasiDataModel | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CObjectInterface() | CObjectInterface | inlinevirtual |
~COutputHandler() | COutputHandler | virtual |
~COutputInterface() | COutputInterface | inlinevirtual |