CLNAResultSubwidget Class Reference

#include <CLNAResultSubwidget.h>

Inheritance diagram for CLNAResultSubwidget:

Collaboration diagram for CLNAResultSubwidget:

Public Member Functions
virtual void	clear ()
	CLNAResultSubwidget (QWidget *parent=0, const char *name=0, Qt::WindowFlags fl=0)
virtual void	loadAll (const CLNAMethod *lnaMethod)
virtual void	loadBMatrixReduced (const CLNAMethod *lnaMethod)
virtual void	loadCovarianceMatrix (const CLNAMethod *lnaMethod)
virtual void	loadCovarianceMatrixReduced (const CLNAMethod *lnaMethod)
	~CLNAResultSubwidget ()
Public Member Functions inherited from CopasiWidget
	CopasiWidget (QWidget *parent=0, const char *name=0, Qt::WFlags f=0)
bool	enter (const std::string &key)
CCopasiDataModel *	getDataModel ()
bool	getIgnoreUpdates ()
virtual bool	leave ()
virtual void	setFramework (int framework)
void	setIgnoreUpdates (bool v)
virtual bool	update (ListViews::ObjectType objectType, ListViews::Action action, const std::string &key)

Protected Slots
virtual void	slotSave ()
virtual void	slotScaled ()
Protected Slots inherited from CopasiWidget
virtual bool	protectedNotify (ListViews::ObjectType objectType, ListViews::Action action, const std::string &key="")

Protected Member Functions
virtual void	init ()
Protected Member Functions inherited from CopasiWidget
virtual bool	enterProtected ()

Private Attributes
const CLNAMethod *	mLNAMethod

Additional Inherited Members
Protected Attributes inherited from CopasiWidget
int	mFramework
bool	mIgnoreUpdates
std::string	mKey
CCopasiDataModel *	mpDataModel
ListViews *	mpListView
CCopasiObject *	mpObject

Detailed Description

Definition at line 33 of file CLNAResultSubwidget.h.

Constructor & Destructor Documentation

CLNAResultSubwidget::CLNAResultSubwidget	(	QWidget *	parent = 0,
		const char *	name = 0,
		Qt::WindowFlags	fl = 0
	)

Definition at line 38 of file CLNAResultSubwidget.cpp.

References init().

  : CopasiWidget(parent, name, fl)
{
  setupUi(this);

  init();
}

CLNAResultSubwidget::~CLNAResultSubwidget

(

)

Definition at line 49 of file CLNAResultSubwidget.cpp.

{
  // no need to delete child widgets, Qt does it all for us
}

Member Function Documentation

void CLNAResultSubwidget::clear ( )

virtual

Definition at line 243 of file CLNAResultSubwidget.cpp.

Referenced by init(), and loadAll().

{
  mTopLabel->setText("No result available, please execute the LNA task.");

  mpArrayCovarianceMatrix->setArrayAnnotation(NULL);
  mpArrayCovarianceMatrixReduced->setArrayAnnotation(NULL);
  mpArrayBMatrixReduced->setArrayAnnotation(NULL);

  return;
}

void CLNAResultSubwidget::init ( )

protectedvirtual

Definition at line 54 of file CLNAResultSubwidget.cpp.

References clear(), and mLNAMethod.

Referenced by CLNAResultSubwidget().

{
  /*
    mSaveButton->setEnabled(false);
    mSaveButton->hide();
  */
  mLNAMethod = NULL;

  clear();
}

void CLNAResultSubwidget::loadAll ( const CLNAMethod *  lnaMethod )

virtual

Definition at line 65 of file CLNAResultSubwidget.cpp.

References CLNAMethod::allNeg, clear(), CSteadyStateMethod::found, CSteadyStateMethod::foundEquilibrium, CSteadyStateMethod::foundNegative, CLNAMethod::getEigenValueStatus(), CLNAMethod::getModel(), CLNAMethod::getSteadyStateStatus(), loadBMatrixReduced(), loadCovarianceMatrix(), loadCovarianceMatrixReduced(), mLNAMethod, CLNAMethod::nonNegEigenvaluesExist, and CSteadyStateMethod::notFound.

Referenced by CLNAResultWidget::loadFromBackend(), slotScaled(), and CLNAResultWidget::update().

{
  mLNAMethod = lnaMethod;

  if (lnaMethod)
    {
      if (!lnaMethod->getModel())
        {
          clear();
          return;
        }

      if ((lnaMethod->getSteadyStateStatus() == CSteadyStateMethod::found) && (lnaMethod->getEigenValueStatus() == CLNAMethod::allNeg))
        {
          mTopLabel->setText("Steady State found.");
          this->loadCovarianceMatrix(lnaMethod);
          this->loadCovarianceMatrixReduced(lnaMethod);
          this->loadBMatrixReduced(lnaMethod);
          mTabWidget->setTabEnabled(0, true);
          mTabWidget->setTabEnabled(1, true);
          mTabWidget->setTabEnabled(2, true);
        }
      else if ((lnaMethod->getSteadyStateStatus() == CSteadyStateMethod::foundEquilibrium) && (lnaMethod->getEigenValueStatus() == CLNAMethod::allNeg))
        {
          mTopLabel->setText("Equilibrium steady state.");
          this->loadCovarianceMatrix(lnaMethod);
          this->loadCovarianceMatrixReduced(lnaMethod);
          this->loadBMatrixReduced(lnaMethod);
          mTabWidget->setTabEnabled(0, true);
          mTabWidget->setTabEnabled(1, true);
          mTabWidget->setTabEnabled(2, true);
        }
      else
        {
          if (lnaMethod->getSteadyStateStatus() == CSteadyStateMethod::foundNegative)
            {
              mTopLabel->setText("Invalid steady state (negative concentrations). No LNA calculated!");
            }
          else if (lnaMethod->getSteadyStateStatus() == CSteadyStateMethod::notFound)
            {
              mTopLabel->setText("No steady state found. No LNA calculated!");
            }
          else if (lnaMethod->getEigenValueStatus() == CLNAMethod::nonNegEigenvaluesExist)
            {
              mTopLabel->setText("The reduced system has non-negative Eigen values! No LNA calculated!");
            }

          /*
                this->loadCovarianceMatrix(lnaMethod);
                this->loadCovarianceMatrixReduced(lnaMethod);
                this->loadBMatrixReduced(lnaMethod);
          */

          mpArrayCovarianceMatrix->setArrayAnnotation(NULL);
          mpArrayCovarianceMatrixReduced->setArrayAnnotation(NULL);
          mpArrayBMatrixReduced->setArrayAnnotation(NULL);
        }
    }
  else
    {
      clear();
      return;
    }
}

void CLNAResultSubwidget::loadBMatrixReduced ( const CLNAMethod *  lnaMethod )

virtual

Definition at line 178 of file CLNAResultSubwidget.cpp.

References CLNAMethod::getScaledBMatrixReducedAnn(), and CLNAMethod::getUnscaledBMatrixReducedAnn().

Referenced by loadAll().

{
  const CArrayAnnotation * bMatrixReducedAnn;

  if (mComboScale->currentIndex() == 0)
    {
      bMatrixReducedAnn = lnaMethod->getScaledBMatrixReducedAnn();

      CColorScaleBiLog * tcs = new CColorScaleBiLog();
      mpArrayBMatrixReduced->setColorCoding(tcs);
      mpArrayBMatrixReduced->setColorScalingAutomatic(true);
    }
  else
    {
      bMatrixReducedAnn = lnaMethod->getUnscaledBMatrixReducedAnn();

      CColorScaleBiLog * tcs = new CColorScaleBiLog();
      mpArrayBMatrixReduced->setColorCoding(tcs);
      mpArrayBMatrixReduced->setColorScalingAutomatic(true);
    }

  mpArrayBMatrixReduced->setArrayAnnotation(bMatrixReducedAnn);
}

void CLNAResultSubwidget::loadCovarianceMatrix ( const CLNAMethod *  lnaMethod )

virtual

Definition at line 130 of file CLNAResultSubwidget.cpp.

References CLNAMethod::getScaledCovarianceMatrixAnn(), and CLNAMethod::getUnscaledCovarianceMatrixAnn().

Referenced by loadAll().

{
  const CArrayAnnotation * covarianceMatrixAnn;

  if (mComboScale->currentIndex() == 0)
    {
      covarianceMatrixAnn = lnaMethod->getScaledCovarianceMatrixAnn();

      CColorScaleBiLog * tcs = new CColorScaleBiLog();
      mpArrayCovarianceMatrix->setColorCoding(tcs);
      mpArrayCovarianceMatrix->setColorScalingAutomatic(true);
    }
  else
    {
      covarianceMatrixAnn = lnaMethod->getUnscaledCovarianceMatrixAnn();

      CColorScaleBiLog * tcs = new CColorScaleBiLog();
      mpArrayCovarianceMatrix->setColorCoding(tcs);
      mpArrayCovarianceMatrix->setColorScalingAutomatic(true);
    }

  mpArrayCovarianceMatrix->setArrayAnnotation(covarianceMatrixAnn);
}

void CLNAResultSubwidget::loadCovarianceMatrixReduced ( const CLNAMethod *  lnaMethod )

virtual

Definition at line 154 of file CLNAResultSubwidget.cpp.

References CLNAMethod::getScaledCovarianceMatrixReducedAnn(), and CLNAMethod::getUnscaledCovarianceMatrixReducedAnn().

Referenced by loadAll().

{
  const CArrayAnnotation * covarianceMatrixReducedAnn;

  if (mComboScale->currentIndex() == 0)
    {
      covarianceMatrixReducedAnn = lnaMethod->getScaledCovarianceMatrixReducedAnn();

      CColorScaleBiLog * tcs = new CColorScaleBiLog();
      mpArrayCovarianceMatrixReduced->setColorCoding(tcs);
      mpArrayCovarianceMatrixReduced->setColorScalingAutomatic(true);
    }
  else
    {
      covarianceMatrixReducedAnn = lnaMethod->getUnscaledCovarianceMatrixReducedAnn();

      CColorScaleBiLog * tcs = new CColorScaleBiLog();
      mpArrayCovarianceMatrixReduced->setColorCoding(tcs);
      mpArrayCovarianceMatrixReduced->setColorScalingAutomatic(true);
    }

  mpArrayCovarianceMatrixReduced->setArrayAnnotation(covarianceMatrixReducedAnn);
}

void CLNAResultSubwidget::slotSave ( )

protectedvirtualslot

Definition at line 202 of file CLNAResultSubwidget.cpp.

References C_INT32, checkSelection(), CLocaleString::fromUtf8(), CCopasiRootContainer::getDatamodelList(), CCopasiTask::getResult(), CopasiFileDialog::getSaveFileName(), and TO_UTF8.

{
  C_INT32 Answer = QMessageBox::No;
  QString fileName;

  while (Answer == QMessageBox::No)
    {
      fileName =
        CopasiFileDialog::getSaveFileName(this, "Save File Dialog",
                                          "untitled.txt", "TEXT Files (*.txt)", "Save to");

      if (fileName.isEmpty()) return;

      // Checks whether the file exists
      Answer = checkSelection(fileName);

      if (Answer == QMessageBox::Cancel) return;
    }

  std::ofstream file(CLocaleString::fromUtf8(TO_UTF8(fileName)).c_str());

  if (file.fail())
    return;

  assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
  CCopasiTask* mpTask =
    dynamic_cast<CLNATask *>((*(*CCopasiRootContainer::getDatamodelList())[0]->getTaskList())["Linear Noise Approximation"]);

  if (mpTask != NULL)
    file << mpTask->getResult();

//    mpTask->printResult(file);

  return;
}

void CLNAResultSubwidget::slotScaled ( )

protectedvirtualslot

Definition at line 238 of file CLNAResultSubwidget.cpp.

References loadAll(), and mLNAMethod.

{
  loadAll(mLNAMethod);
}

Member Data Documentation

const CLNAMethod* CLNAResultSubwidget::mLNAMethod

private

Definition at line 57 of file CLNAResultSubwidget.h.

Referenced by init(), loadAll(), and slotScaled().

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The documentation for this class was generated from the following files:

• CLNAResultSubwidget.h
• CLNAResultSubwidget.cpp