test000048 Class Reference

#include <test000048.h>

Inheritance diagram for test000048:

Collaboration diagram for test000048:

Public Member Functions
void	setUp ()
void	tearDown ()
void	test_bug919 ()

Static Protected Attributes
static const char *	MODEL_STRING
static CCopasiDataModel *	pCOPASIDATAMODEL = NULL

Private Member Functions
	CPPUNIT_TEST (test_bug919)
	CPPUNIT_TEST_SUITE (test000048)
	CPPUNIT_TEST_SUITE_END ()

Detailed Description

Definition at line 24 of file test000048.h.

Member Function Documentation

test000048::CPPUNIT_TEST ( test_bug919  )

private

test000048::CPPUNIT_TEST_SUITE ( test000048  )

private

test000048::CPPUNIT_TEST_SUITE_END ( )

private

void test000048::setUp

(

)

Definition at line 36 of file test000048.cpp.

References CCopasiRootContainer::addDatamodel(), CCopasiRootContainer::init(), and pCOPASIDATAMODEL.

{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  // Create the global data model.
  pCOPASIDATAMODEL = CCopasiRootContainer::addDatamodel();
}

void test000048::tearDown

(

)

Definition at line 44 of file test000048.cpp.

References CCopasiRootContainer::destroy().

{
  CCopasiRootContainer::destroy();
}

void test000048::test_bug919

(

)

Definition at line 49 of file test000048.cpp.

References CCopasiDataModel::exportSBMLToString(), CCopasiDataModel::getCurrentSBMLDocument(), CCopasiDataModel::getModel(), load_cps_model_from_stream(), MODEL_STRING, and pCOPASIDATAMODEL.

{
  // load the CPS file
  // export to SBML
  // check the resulting SBML model
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  std::istringstream iss(test000048::MODEL_STRING);
  CPPUNIT_ASSERT(load_cps_model_from_stream(iss, *pDataModel) == true);
  CPPUNIT_ASSERT(pDataModel->getModel() != NULL);
  CPPUNIT_ASSERT(pDataModel->exportSBMLToString(NULL, 2, 3).empty() == false);
  SBMLDocument* pDocument = pDataModel->getCurrentSBMLDocument();
  CPPUNIT_ASSERT(pDocument != NULL);
  Model* pModel = pDocument->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  // assert that there is only one compartment and
  // assert the compartment is constant
  CPPUNIT_ASSERT(pModel->getNumCompartments() == 1);
  Compartment* pCompartment = pModel->getCompartment(0);
  CPPUNIT_ASSERT(pCompartment->getConstant() == false);
  // since the compartment is no constant all species should be
  // exported with the hasOnlySubstanceUnits flag set to true
  CPPUNIT_ASSERT(pModel->getNumSpecies() == 2);
  const Species* pA = pModel->getSpecies(0);
  CPPUNIT_ASSERT(pA != NULL);
  CPPUNIT_ASSERT(pA->getHasOnlySubstanceUnits() == true);
  const Species* pB = pModel->getSpecies(0);
  CPPUNIT_ASSERT(pB != NULL);
  CPPUNIT_ASSERT(pB->getHasOnlySubstanceUnits() == true);

  CPPUNIT_ASSERT(pModel->getNumInitialAssignments() == 1);
  // check the initial assignment
  const InitialAssignment* pIA = pModel->getInitialAssignment(0);
  CPPUNIT_ASSERT(pIA != NULL);
  CPPUNIT_ASSERT(pIA->getSymbol() == pCompartment->getId());
  CPPUNIT_ASSERT(pIA->isSetMath() == true);
  const ASTNode* pNode = pIA->getMath();
  CPPUNIT_ASSERT(pNode != NULL);
  // since the quantity unit is set to particle numbers, the expression should
  // consists of only one node which is a reference to species A
  CPPUNIT_ASSERT(pNode->getType() == AST_NAME);
  CPPUNIT_ASSERT(pNode->getName() == pA->getId());
  CPPUNIT_ASSERT(pModel->getNumRules() == 1);
  // check the rule
  const Rule* pRule = pModel->getRule(0);
  CPPUNIT_ASSERT(pRule != NULL);
  const RateRule* pRateRule = dynamic_cast<const RateRule*>(pRule);
  CPPUNIT_ASSERT(pRateRule != NULL);
  CPPUNIT_ASSERT(pRateRule->getVariable() == pCompartment->getId());
  CPPUNIT_ASSERT(pRule->isSetMath() == true);
  pNode = pRateRule->getMath();
  CPPUNIT_ASSERT(pNode != NULL);
  CPPUNIT_ASSERT(pNode->getType() == AST_NAME);
  CPPUNIT_ASSERT(pNode->getName() == pA->getId());
}

Member Data Documentation

const char * test000048::MODEL_STRING

staticprotected

Definition at line 31 of file test000048.h.

Referenced by test_bug919().

CCopasiDataModel * test000048::pCOPASIDATAMODEL = NULL

staticprotected

Definition at line 32 of file test000048.h.

Referenced by setUp(), and test_bug919().

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The documentation for this class was generated from the following files:

• test000048.h
• test000048.cpp