test000051 Class Reference

#include <test000051.h>

Inheritance diagram for test000051:

Collaboration diagram for test000051:

Public Member Functions
void	setUp ()
void	tearDown ()
void	test_bug988 ()

Static Protected Attributes
static const char *	MODEL_STRING
static CCopasiDataModel *	pCOPASIDATAMODEL = NULL

Private Member Functions
	CPPUNIT_TEST (test_bug988)
	CPPUNIT_TEST_SUITE (test000051)
	CPPUNIT_TEST_SUITE_END ()

Detailed Description

Definition at line 24 of file test000051.h.

Member Function Documentation

test000051::CPPUNIT_TEST ( test_bug988  )

private

test000051::CPPUNIT_TEST_SUITE ( test000051  )

private

test000051::CPPUNIT_TEST_SUITE_END ( )

private

void test000051::setUp

(

)

Definition at line 36 of file test000051.cpp.

References CCopasiRootContainer::addDatamodel(), CCopasiRootContainer::init(), and pCOPASIDATAMODEL.

{
  // Create the root container.
  CCopasiRootContainer::init(0, NULL, false);
  // Create the global data model.
  pCOPASIDATAMODEL = CCopasiRootContainer::addDatamodel();
}

void test000051::tearDown

(

)

Definition at line 44 of file test000051.cpp.

References CCopasiRootContainer::destroy().

{
  CCopasiRootContainer::destroy();
}

void test000051::test_bug988

(

)

Definition at line 49 of file test000051.cpp.

References CCopasiDataModel::exportSBMLToString(), CCopasiDataModel::getCurrentSBMLDocument(), CCopasiDataModel::getModel(), load_cps_model_from_stream(), MODEL_STRING, and pCOPASIDATAMODEL.

{
  // load the CPS file
  // export to SBML
  // check the resulting SBML model
  CCopasiDataModel* pDataModel = pCOPASIDATAMODEL;
  std::istringstream iss(test000051::MODEL_STRING);
  CPPUNIT_ASSERT(load_cps_model_from_stream(iss, *pDataModel) == true);
  CPPUNIT_ASSERT(pDataModel->getModel() != NULL);
  CPPUNIT_ASSERT(pDataModel->exportSBMLToString(NULL, 2, 3).empty() == false);
  SBMLDocument* pDocument = pDataModel->getCurrentSBMLDocument();
  CPPUNIT_ASSERT(pDocument != NULL);
  Model* pModel = pDocument->getModel();
  CPPUNIT_ASSERT(pModel != NULL);
  // assert that there is only one compartment and
  // assert the compartment is constant
  CPPUNIT_ASSERT(pModel->getNumCompartments() == 1);
  Compartment* pCompartment = pModel->getCompartment(0);
  CPPUNIT_ASSERT(pCompartment->getConstant() == true);
  CPPUNIT_ASSERT(pModel->getNumParameters() == 0);
  CPPUNIT_ASSERT(pModel->getNumSpecies() == 1);
  const Species* pSpecies = pModel->getSpecies(0);
  std::string idSpeciesA = pSpecies->getId();
  CPPUNIT_ASSERT(pSpecies->getHasOnlySubstanceUnits() == false);
  CPPUNIT_ASSERT(pModel->getNumRules() == 1);
  AssignmentRule* pRule = dynamic_cast<AssignmentRule*>(pModel->getRule(0));
  CPPUNIT_ASSERT(pRule != NULL);
  CPPUNIT_ASSERT(pRule->getVariable() == idSpeciesA);
  const ASTNode* pMath = pRule->getMath();
  CPPUNIT_ASSERT(pMath != NULL);
  // make sure the mathematical expression contains a piecewise
  // function definition
  CPPUNIT_ASSERT(pMath->getType() == AST_FUNCTION_PIECEWISE);
  CPPUNIT_ASSERT(pMath->getNumChildren() == 3);
  CPPUNIT_ASSERT(pMath->getChild(0) != NULL);
  CPPUNIT_ASSERT(pMath->getChild(0)->getType() == AST_REAL);
  CPPUNIT_ASSERT(pMath->getChild(0)->getReal() < 1e-6);
  CPPUNIT_ASSERT(pMath->getChild(2) != NULL);
  CPPUNIT_ASSERT(pMath->getChild(2)->getType() == AST_REAL);
  CPPUNIT_ASSERT(fabs((pMath->getChild(2)->getReal() - 10.0) / 10.0) < 1e-3);
  pMath = pMath->getChild(1);
  CPPUNIT_ASSERT(pMath != NULL);
  CPPUNIT_ASSERT(pMath->getType() == AST_RELATIONAL_LT);
  CPPUNIT_ASSERT(pMath->getNumChildren() == 2);
  CPPUNIT_ASSERT(pMath->getChild(0) != NULL);
  CPPUNIT_ASSERT(pMath->getChild(0)->getType() == AST_NAME_TIME);
  CPPUNIT_ASSERT(pMath->getChild(1) != NULL);
  CPPUNIT_ASSERT(pMath->getChild(1)->getType() == AST_REAL);
  CPPUNIT_ASSERT(fabs((pMath->getChild(1)->getReal() - 5.0) / 5.0) < 1e-3);
  CPPUNIT_ASSERT(pModel->getNumReactions() == 0);
}

Member Data Documentation

const char * test000051::MODEL_STRING

staticprotected

Definition at line 31 of file test000051.h.

Referenced by test_bug988().

CCopasiDataModel * test000051::pCOPASIDATAMODEL = NULL

staticprotected

Definition at line 32 of file test000051.h.

Referenced by setUp(), and test_bug988().

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The documentation for this class was generated from the following files:

• test000051.h
• test000051.cpp