CStochDirectMethod::CReactionDependencies Class Reference

Collaboration diagram for CStochDirectMethod::CReactionDependencies:

Public Member Functions
	CReactionDependencies ()
	CReactionDependencies (const CReactionDependencies &src)
CReactionDependencies &	operator= (const CReactionDependencies &rhs)
	~CReactionDependencies ()

Public Attributes
std::vector< Refresh * >	mCalculations
CVector< size_t >	mDependentReactions
CVector< C_FLOAT64 * >	mMethodSpecies
CVector< C_FLOAT64 * >	mMethodSubstrates
CVector< C_FLOAT64 * >	mModelSpecies
CVector< C_FLOAT64 * >	mModelSubstrates
C_FLOAT64 *	mpParticleFlux
CVector< C_FLOAT64 >	mSpeciesMultiplier
CVector< C_FLOAT64 >	mSubstrateMultiplier

Detailed Description

Definition at line 45 of file CStochDirectMethod.h.

Constructor & Destructor Documentation

CStochDirectMethod::CReactionDependencies::CReactionDependencies

(

)

Default constructor

Definition at line 44 of file CStochDirectMethod.cpp.

                                                              :
  mSpeciesMultiplier(0),
  mMethodSpecies(0),
  mModelSpecies(0),
  mCalculations(),
  mDependentReactions(0),
  mSubstrateMultiplier(0),
  mMethodSubstrates(0),
  mModelSubstrates(0),
  mpParticleFlux(NULL)
{}

CStochDirectMethod::CReactionDependencies::CReactionDependencies

(

const CReactionDependencies &

src

)

Copy constructor

Parameters

const

CReactionDependencies & src

Definition at line 56 of file CStochDirectMethod.cpp.

                                                                                               :
  mSpeciesMultiplier(src.mSpeciesMultiplier),
  mMethodSpecies(src.mMethodSpecies),
  mModelSpecies(src.mModelSpecies),
  mCalculations(src.mCalculations),
  mDependentReactions(src.mDependentReactions),
  mSubstrateMultiplier(src.mSubstrateMultiplier),
  mMethodSubstrates(src.mMethodSubstrates),
  mModelSubstrates(src.mModelSubstrates),
  mpParticleFlux(src.mpParticleFlux)
{}

CStochDirectMethod::CReactionDependencies::~CReactionDependencies

(

)

Destructor

Definition at line 68 of file CStochDirectMethod.cpp.

{}

Member Function Documentation

CStochDirectMethod::CReactionDependencies & CStochDirectMethod::CReactionDependencies::operator=

(

const CReactionDependencies &

rhs

)

Assignment operator

Parameters

const

CReactionDependencies & rhs

Returns

CReactionDependencies &

Definition at line 71 of file CStochDirectMethod.cpp.

References mCalculations, mDependentReactions, mMethodSpecies, mMethodSubstrates, mModelSpecies, mModelSubstrates, mpParticleFlux, mSpeciesMultiplier, and mSubstrateMultiplier.

{
  mSpeciesMultiplier = rhs.mSpeciesMultiplier;
  mMethodSpecies = rhs.mMethodSpecies;
  mModelSpecies = rhs.mModelSpecies;
  mCalculations = rhs.mCalculations;
  mDependentReactions = rhs.mDependentReactions;
  mSubstrateMultiplier = rhs.mSubstrateMultiplier;
  mMethodSubstrates = rhs.mMethodSubstrates;
  mModelSubstrates = rhs.mModelSubstrates;
  mpParticleFlux = rhs.mpParticleFlux;

  return * this;
}

Member Data Documentation

std::vector< Refresh * > CStochDirectMethod::CReactionDependencies::mCalculations

Vector of refresh methods which need to be executed to update all values required for simulation

Definition at line 92 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::doSingleStep(), and operator=().

CVector< size_t > CStochDirectMethod::CReactionDependencies::mDependentReactions

A vector of indexes of reaction which propensities have to be recalculated.

Definition at line 97 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::doSingleStep(), and operator=().

CVector< C_FLOAT64 * > CStochDirectMethod::CReactionDependencies::mMethodSpecies

Vector of pointers to method internal species values to calculate the new state.

Definition at line 82 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::doSingleStep(), and operator=().

CVector< C_FLOAT64 * > CStochDirectMethod::CReactionDependencies::mMethodSubstrates

Vector of pointers to method internal species values to calculate the new propensity.

Definition at line 107 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::calculateAmu(), and operator=().

CVector< C_FLOAT64 * > CStochDirectMethod::CReactionDependencies::mModelSpecies

Vector of pointers to model species values to calculate the new state.

Definition at line 87 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::doSingleStep(), and operator=().

CVector< C_FLOAT64 * > CStochDirectMethod::CReactionDependencies::mModelSubstrates

Vector of pointers to model species values to calculate the new propensity.

Definition at line 112 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::calculateAmu(), and operator=().

C_FLOAT64* CStochDirectMethod::CReactionDependencies::mpParticleFlux

A pointer to the particle flux of the reaction.

Definition at line 117 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::calculateAmu(), and operator=().

CVector< C_FLOAT64 > CStochDirectMethod::CReactionDependencies::mSpeciesMultiplier

Vector of multiplier to calculate the new state

Definition at line 77 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::doSingleStep(), and operator=().

CVector< C_FLOAT64 > CStochDirectMethod::CReactionDependencies::mSubstrateMultiplier

Vector of multiplier to calculate the new propensity.

Definition at line 102 of file CStochDirectMethod.h.

Referenced by CStochDirectMethod::calculateAmu(), and operator=().

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The documentation for this class was generated from the following files:

• CStochDirectMethod.h
• CStochDirectMethod.cpp