COPASI API
4.16.103
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Public Member Functions | |
CReactionDependencies () | |
CReactionDependencies (const CReactionDependencies &src) | |
CReactionDependencies & | operator= (const CReactionDependencies &rhs) |
~CReactionDependencies () | |
Public Attributes | |
std::vector< Refresh * > | mCalculations |
CVector< size_t > | mDependentReactions |
CVector< C_FLOAT64 * > | mMethodSpecies |
CVector< C_FLOAT64 * > | mMethodSubstrates |
CVector< C_FLOAT64 * > | mModelSpecies |
CVector< C_FLOAT64 * > | mModelSubstrates |
C_FLOAT64 * | mpParticleFlux |
CVector< C_FLOAT64 > | mSpeciesMultiplier |
CVector< C_FLOAT64 > | mSubstrateMultiplier |
Definition at line 45 of file CStochDirectMethod.h.
CStochDirectMethod::CReactionDependencies::CReactionDependencies | ( | ) |
Default constructor
Definition at line 44 of file CStochDirectMethod.cpp.
CStochDirectMethod::CReactionDependencies::CReactionDependencies | ( | const CReactionDependencies & | src | ) |
Copy constructor
const | CReactionDependencies & src |
Definition at line 56 of file CStochDirectMethod.cpp.
CStochDirectMethod::CReactionDependencies::~CReactionDependencies | ( | ) |
CStochDirectMethod::CReactionDependencies & CStochDirectMethod::CReactionDependencies::operator= | ( | const CReactionDependencies & | rhs | ) |
Assignment operator
const | CReactionDependencies & rhs |
Definition at line 71 of file CStochDirectMethod.cpp.
References mCalculations, mDependentReactions, mMethodSpecies, mMethodSubstrates, mModelSpecies, mModelSubstrates, mpParticleFlux, mSpeciesMultiplier, and mSubstrateMultiplier.
std::vector< Refresh * > CStochDirectMethod::CReactionDependencies::mCalculations |
Vector of refresh methods which need to be executed to update all values required for simulation
Definition at line 92 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::doSingleStep(), and operator=().
CVector< size_t > CStochDirectMethod::CReactionDependencies::mDependentReactions |
A vector of indexes of reaction which propensities have to be recalculated.
Definition at line 97 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::doSingleStep(), and operator=().
Vector of pointers to method internal species values to calculate the new state.
Definition at line 82 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::doSingleStep(), and operator=().
Vector of pointers to method internal species values to calculate the new propensity.
Definition at line 107 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::calculateAmu(), and operator=().
Vector of pointers to model species values to calculate the new state.
Definition at line 87 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::doSingleStep(), and operator=().
Vector of pointers to model species values to calculate the new propensity.
Definition at line 112 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::calculateAmu(), and operator=().
C_FLOAT64* CStochDirectMethod::CReactionDependencies::mpParticleFlux |
A pointer to the particle flux of the reaction.
Definition at line 117 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::calculateAmu(), and operator=().
Vector of multiplier to calculate the new state
Definition at line 77 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::doSingleStep(), and operator=().
Vector of multiplier to calculate the new propensity.
Definition at line 102 of file CStochDirectMethod.h.
Referenced by CStochDirectMethod::calculateAmu(), and operator=().