CCopasiXMLParser::ModelParameterSetElement Class Reference

Inheritance diagram for CCopasiXMLParser::ModelParameterSetElement:

Collaboration diagram for CCopasiXMLParser::ModelParameterSetElement:

Public Member Functions
virtual void	end (const XML_Char *pszName)
	ModelParameterSetElement (CCopasiXMLParser &parser, SCopasiXMLParserCommon &common)
virtual void	start (const XML_Char *pszName, const XML_Char **papszAttrs)
virtual	~ModelParameterSetElement ()
Public Member Functions inherited from CXMLElementHandler< CCopasiXMLParser, SCopasiXMLParserCommon >
	CXMLElementHandler (CCopasiXMLParser &parser, SCopasiXMLParserCommon &common)
virtual void	end (const XML_Char *C_UNUSED(pszName))
virtual void	reset ()
virtual void	start (const XML_Char *C_UNUSED(pszName), const XML_Char **C_UNUSED(papszAttrs))
virtual	~CXMLElementHandler ()

Private Types
enum	Element {   ModelParameterSet = 0, MiriamAnnotation, Comment, ListOfUnsupportedAnnotations,   Content }

Private Attributes
std::string	mKey
ModelParameterElement *	mpModelParameterElement
ModelParameterGroupElement *	mpModelParameterGroupElement

Additional Inherited Members
Protected Member Functions inherited from CXMLElementHandler< CCopasiXMLParser, SCopasiXMLParserCommon >
void	addFix (const std::string &key, CCopasiObject *pObject)
void	deleteCurrentHandler ()
Protected Attributes inherited from CXMLElementHandler< CCopasiXMLParser, SCopasiXMLParserCommon >
SCopasiXMLParserCommon &	mCommon
C_INT32	mCurrentElement
C_INT32	mLastKnownElement
CCopasiXMLParser &	mParser
CXMLElementHandler *	mpCurrentHandler

Detailed Description

Definition at line 107 of file CCopasiXMLParser.h.

Member Enumeration Documentation

enum CCopasiXMLParser::ModelParameterSetElement::Element

private

Enum of invoked parsers

Enumerator
ModelParameterSet
MiriamAnnotation
Comment
ListOfUnsupportedAnnotations
Content

Definition at line 115 of file CCopasiXMLParser.h.

Constructor & Destructor Documentation

CCopasiXMLParser::ModelParameterSetElement::ModelParameterSetElement	(	CCopasiXMLParser &	parser,
		SCopasiXMLParserCommon &	common
	)

Constructor

Definition at line 151 of file ListOfModelParameterSets.cpp.

                                    :
  CXMLElementHandler< CCopasiXMLParser, SCopasiXMLParserCommon >(parser, common),
  mKey(),
  mpModelParameterGroupElement(NULL),
  mpModelParameterElement(NULL)
{}

CCopasiXMLParser::ModelParameterSetElement::~ModelParameterSetElement ( )

virtual

Destructor

Definition at line 159 of file ListOfModelParameterSets.cpp.

References pdelete.

{
  pdelete(mpModelParameterGroupElement);
  pdelete(mpModelParameterElement);
}

Member Function Documentation

void CCopasiXMLParser::ModelParameterSetElement::end ( const XML_Char *  pszName )

virtual

End element handler

Parameters

const

XML_Char *pszName

Definition at line 275 of file ListOfModelParameterSets.cpp.

References SCopasiXMLParserCommon::CharacterData, CCopasiMessage::EXCEPTION, CModelParameterSet::getKey(), CCopasiXMLParser::mCommon, MCXML, SCopasiXMLParserCommon::ModelParameterGroupStack, CExpatTemplate< CExpat >::mParser, SCopasiXMLParserCommon::pCurrentModelParameter, CAnnotation::setMiriamAnnotation(), START_ELEMENT, and UNKNOWN_ELEMENT.

{
  switch (mCurrentElement)
    {
      case ModelParameterSet:

        if (strcmp(pszName, "ModelParameterSet"))
          CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 11,
                         pszName, "ModelParameterSet", mParser.getCurrentLineNumber());

        mCommon.ModelParameterGroupStack.pop();

        mParser.popElementHandler();
        mLastKnownElement = START_ELEMENT;

        /* Tell the parent element we are done. */
        mParser.onEndElement(pszName);
        break;

      case MiriamAnnotation:

        if (strcmp(pszName, "MiriamAnnotation"))
          CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 11,
                         pszName, "MiriamAnnotation", mParser.getCurrentLineNumber());

        {
          CModelParameterSet * pModelParameterSet = static_cast< CModelParameterSet * >(mCommon.ModelParameterGroupStack.top());
          pModelParameterSet->setMiriamAnnotation(mCommon.CharacterData, pModelParameterSet->getKey(), mKey);
        }

        mCommon.CharacterData = "";
        break;

      case Comment:

        if (strcmp(pszName, "Comment"))
          CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 11,
                         pszName, "Comment", mParser.getCurrentLineNumber());

        static_cast< CModelParameterSet * >(mCommon.ModelParameterGroupStack.top())->setNotes(mCommon.CharacterData);
        mCommon.CharacterData = "";
        break;

      case ListOfUnsupportedAnnotations:

        if (strcmp(pszName, "ListOfUnsupportedAnnotations"))
          CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 11,
                         pszName, "ListOfUnsupportedAnnotations", mParser.getCurrentLineNumber());

        static_cast< CModelParameterSet * >(mCommon.ModelParameterGroupStack.top())->getUnsupportedAnnotations() =
          mParser.mListOfUnsupportedAnnotationsElement.getUnsupportedAnnotations();

        break;

      case Content:

        if (strcmp(pszName, "ModelParameterGroup") &&
            strcmp(pszName, "ModelParameter"))
          {
            CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 11,
                           pszName, "ModelParameterGroup or ModelParameter", mParser.getCurrentLineNumber());
          }

        if (mCommon.pCurrentModelParameter != NULL)
          {
            mCommon.ModelParameterGroupStack.top()->add(mCommon.pCurrentModelParameter);
            mCommon.pCurrentModelParameter = NULL;
          }

        // Content may be repeated therefore we set to the previous element which is ListOfUnkownAnnotations.
        mCurrentElement = mLastKnownElement = ModelParameterSet;
        break;

      case UNKNOWN_ELEMENT:
        mCurrentElement = mLastKnownElement;
        break;

      default:
        CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 11,
                       pszName, "???", mParser.getCurrentLineNumber());
        break;
    }

  return;
}

void CCopasiXMLParser::ModelParameterSetElement::start ( const XML_Char *  pszName, const XML_Char **  papszAttrs  )

virtual

Start element handler

Parameters

const	XML_Char *pszName
const	XML_Char **papszAttrs

Definition at line 165 of file ListOfModelParameterSets.cpp.

References CCopasiVectorN< CType >::add(), CKeyFactory::addFix(), CCopasiMessage::EXCEPTION, CModel::getModelParameterSets(), SCopasiXMLParserCommon::KeyMap, CCopasiXMLParser::mCommon, MCXML, SCopasiXMLParserCommon::ModelParameterGroupStack, CExpatTemplate< CExpat >::mParser, SCopasiXMLParserCommon::pModel, CCopasiObject::setObjectName(), and UNKNOWN_ELEMENT.

{
  const char * Name;

  mpCurrentHandler = NULL;
  mCurrentElement = mLastKnownElement;

  while (mpCurrentHandler == NULL)
    {
      mCurrentElement++; /* We should always be on the next element */

      switch (mCurrentElement)
        {
          case ModelParameterSet:

            if (strcmp(pszName, "ModelParameterSet"))
              CCopasiMessage(CCopasiMessage::EXCEPTION, MCXML + 10,
                             pszName, "ModelParameterSet", mParser.getCurrentLineNumber());

            mLastKnownElement = ModelParameterSet;

            // Element specific code.
            mKey = mParser.getAttributeValue("key", papszAttrs);
            Name = mParser.getAttributeValue("name", papszAttrs);

            {
              CModelParameterSet * pModelParameterSet = new CModelParameterSet(Name);
              int index = 1;

              // We need to resolve naming conflicts.
              while (!mCommon.pModel->getModelParameterSets().add(pModelParameterSet, true))
                {
                  std::ostringstream NewName;
                  NewName << Name << "[" << index++ << "]";
                  pModelParameterSet->setObjectName(NewName.str());
                }

              mCommon.ModelParameterGroupStack.push(pModelParameterSet);
              mCommon.KeyMap.addFix(mKey, pModelParameterSet);
            }
            return;

          case MiriamAnnotation:

            if (!strcmp(pszName, "MiriamAnnotation"))
              {
                mpCurrentHandler = &mParser.mMiriamAnnotationElement;
                mLastKnownElement = mCurrentElement;
              }

            break;

          case Comment:

            if (!strcmp(pszName, "Comment"))
              {
                mpCurrentHandler = &mParser.mCommentElement;
                mLastKnownElement = mCurrentElement;
              }

            break;

          case ListOfUnsupportedAnnotations:

            if (!strcmp(pszName, "ListOfUnsupportedAnnotations"))
              mpCurrentHandler = &mParser.mListOfUnsupportedAnnotationsElement;

            break;

          case Content:

            if (!strcmp(pszName, "ModelParameterGroup"))
              {
                /* If we do not have an etc element handler we create one. */
                if (!mpModelParameterGroupElement)
                  mpModelParameterGroupElement = new ModelParameterGroupElement(mParser, mCommon);

                mpCurrentHandler = mpModelParameterGroupElement;
              }
            else if (!strcmp(pszName, "ModelParameter"))
              {
                /* If we do not have an etc element handler we create one. */
                if (!mpModelParameterElement)
                  mpModelParameterElement = new ModelParameterElement(mParser, mCommon);

                mpCurrentHandler = mpModelParameterElement;
              }

            break;

          default:
            mCurrentElement = UNKNOWN_ELEMENT;
            mpCurrentHandler = &mParser.mUnknownElement;
            break;
        }
    }

  mParser.pushElementHandler(mpCurrentHandler);

  if (mpCurrentHandler != &mParser.mUnknownElement)
    {
      mLastKnownElement = mCurrentElement;
    }

  mParser.onStartElement(pszName, papszAttrs);

  return;
}

Member Data Documentation

std::string CCopasiXMLParser::ModelParameterSetElement::mKey

private

The key as provided in the XML

Definition at line 155 of file CCopasiXMLParser.h.

ModelParameterElement* CCopasiXMLParser::ModelParameterSetElement::mpModelParameterElement

private

A pointer to the ModelParameter element handler

Definition at line 165 of file CCopasiXMLParser.h.

ModelParameterGroupElement* CCopasiXMLParser::ModelParameterSetElement::mpModelParameterGroupElement

private

A pointer to the ModelParameterGroup element handler

Definition at line 160 of file CCopasiXMLParser.h.

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The documentation for this class was generated from the following files:

• CCopasiXMLParser.h
• ListOfModelParameterSets.cpp